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Record W4220718803 · doi:10.1038/s41380-022-01441-w

Meta-analysis of epigenome-wide associations between DNA methylation at birth and childhood cognitive skills

2022· review· en· W4220718803 on OpenAlexafffund
Doretta Caramaschi, Alexander Neumann, Andrés Cárdenas, Gwen Tindula, Silvia Alemany, Lea Zillich, Giancarlo Pesce, Jari Lahti, Alexandra Havdahl, Rosa H. Mulder, Janine F. Felix, Henning Tiemeier, Lea Sirignano, Josef Frank, Stephanie H. Witt, Marcella Rietschel, Michael Deuschle, Karen Huen, Brenda Eskenazi, Tabea Send, Muriel Ferrer, Maria Gilles, Maria De Agostini, Nour Baïz, Sheryl L. Rifas‐Shiman, Tuomas Kvist, Darina Czamara, Samuli Tuominen, Caroline L. Relton, Dheeraj Rai, Stephanie J. London, Katri Räikkönen, Nina Holland, Isabella Annesi‐Maesano, Fabian Streit, Marie‐France Hivert, Emily Oken, Jordi Sunyer, Charlotte A. M. Cecil, Gemma C. Sharp

Bibliographic record

VenueMolecular Psychiatry · 2022
Typereview
Languageen
FieldEnvironmental Science
TopicHealth, Environment, Cognitive Aging
Canadian institutionsJewish General Hospital
FundersNational Institute of Environmental Health SciencesHelse Sør-Øst RHFInstituto de Salud Carlos IIINational Institutes of HealthEconomic and Social Research CouncilMinisterio de Asuntos Económicos y Transformación Digital, Gobierno de EspañaInstitut pour la Recherche en Santé PubliqueNovo Nordisk FondenMutuelle Générale de l'Education NationaleAgence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du TravailMedical Research CouncilSigne ja Ane Gyllenbergin SäätiöNational Institute on Drug AbuseNovo NordiskJuho Vainion SäätiöCanadian Institutes of Health ResearchYrjö Jahnssonin SäätiöJane ja Aatos Erkon SäätiöNational Institute of Mental HealthFondation pour la Recherche MédicaleGeneralitat de CatalunyaBundesministerium für Bildung und ForschungPäivikki ja Sakari Sohlbergin SäätiöSuomen Lääketieteen SäätiöAcademy of FinlandErasmus Universiteit RotterdamEunice Kennedy Shriver National Institute of Child Health and Human DevelopmentZonMwInstitut National de la Santé et de la Recherche MédicaleNorges ForskningsrådErasmus Medisch CentrumCentres de Recerca de CatalunyaUniversity of BristolDeutsche ForschungsgemeinschaftHelsingin YliopistoEuropean CommissionJalmari ja Rauha Ahokkaan SäätiöJoint Programming Initiative A healthy diet for a healthy lifeNederlandse Organisatie voor Wetenschappelijk OnderzoekCHIST-ERAAgence Nationale de la RechercheBiotechnology and Biological Sciences Research CouncilWellcome TrustFundació la Marató de TV3Université Paris-SudEmil Aaltosen SäätiöFundação de Amparo à Pesquisa do Estado de São Paulo
KeywordsEpigeneticsEpigenomeDNA methylationCognitionCpG siteCord bloodPsychologyPopulationGeneticsDevelopmental psychologyBiologyMedicineNeuroscienceGene

Abstract

fetched live from OpenAlex

Cognitive skills are a strong predictor of a wide range of later life outcomes. Genetic and epigenetic associations across the genome explain some of the variation in general cognitive abilities in the general population and it is plausible that epigenetic associations might arise from prenatal environmental exposures and/or genetic variation early in life. We investigated the association between cord blood DNA methylation at birth and cognitive skills assessed in children from eight pregnancy cohorts within the Pregnancy And Childhood Epigenetics (PACE) Consortium across overall (total N = 2196), verbal (total N = 2206) and non-verbal cognitive scores (total N = 3300). The associations at single CpG sites were weak for all of the cognitive domains investigated. One region near DUSP22 on chromosome 6 was associated with non-verbal cognition in a model adjusted for maternal IQ. We conclude that there is little evidence to support the idea that variation in cord blood DNA methylation at single CpG sites is associated with cognitive skills and further studies are needed to confirm the association at DUSP22.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.006
metaresearch head score (Gemma)0.012
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Meta-analysis · Consensus signal: Meta-analysis
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.008
Threshold uncertainty score0.030

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0060.012
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0080.012
Bibliometrics0.0030.005
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0040.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.049
GPT teacher head0.317
Teacher spread0.268 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designMeta-analysis
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations32
Published2022
Admission routes2
Has abstractyes

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