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The MCF Toxin of the Extracellular Pathogen <i>Vibrio vulnificus</i> is Activated by and Targets Host GTPases

2022· article· en· W4225378684 on OpenAlexaff
Alfa Herrera, Megan M. Packer, John H. Brumell, Karla Satchell

Bibliographic record

VenueThe FASEB Journal · 2022
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicVibrio bacteria research studies
Canadian institutionsHospital for Sick ChildrenUniversity of Toronto
Fundersnot available
KeywordsVibrio vulnificusMicrobiologyVirulencePathogenEffectorBiologyVirulence factorToxinExtracellularSepsisSecretionBacteriaImmunologyGeneCell biologyGenetics

Abstract

fetched live from OpenAlex

Vibrio vulnificus ( Vv ) is a Gram‐negative bacterial pathogen typically found in warm coastal waters. This pathogen causes severe life‐threatening gastrointestinal and wound infections, most commonly from the consumption of contaminated seafood or an exposed wound. Infections progress quickly to sepsis, and death; approximately 90% of patients are hospitalized and >50% die, often as fast as 48 hours after symptom onset. Of concern, the incidence of Vv is increasing, in part due to its expanding geographical distribution caused by climate change. Bacterial pathogens cause debilitating and lethal infections that are often difficult to treat. Understanding how to manage and control the infections they cause is immensely important for improving quality of life and preventing death. The toxins secreted by extracellular bacteria are frequently the primary virulence factors required to either establish colonization, promote maintenance, growth, and/or eventually dissemination. As such bacterial toxins are extremely important in pathogenesis, and they affect and manipulate many host cellular processes. The primary Vv virulence factor associated with sepsis and subsequent death is the composite MARTX toxin. The MARTX toxin is secreted as a single large polypeptide composed of glycine‐rich repeats at both the N‐ and C‐termini between which there are up to five variable effector domains and a cysteine protease domain (CPD). The repeat regions form a pore in the plasma membrane and the effectors and CPD are translocated across. Within the cell, the CPD auto‐cleaves at multiple sites to release each of the arrayed effectors individually into the host cytoplasm. The MARTX toxin thus serves as an effector delivery platform for translocation of multiple toxic virulence factors inside cells as a single bolus. The Makes Caterpillars Floppy‐like (MCF) effector domain is among the most commonly present Vv MARTX effector domains. MCF is unique from most other MARTX domains in that it utilizes its own autoproteolytic activity to activate itself once inside the host cell. MCF autoprocessing requires stimulation by host ARFs, small GTPases that cycle between GDP‐ or GTP‐bound forms and localize to specific subcellular locations. Once auto‐processed, MCF binds phosphatidylinositol‐5‐phosphate (PtdIns5P), a lipid enriched on Golgi membranes, and its exposed N‐terminal glycine is acetylated. Combined, this results in the generation of “active” MCF (aMCF). aMCF induces the intrinsic apoptotic pathway, causes cell rounding, and nuclear fragmentation. Furthermore, aMCF causes vesiculation of the Golgi apparatus, and destroys the mitochondria. Remarkably, while ARF stimulated autoprocessing results in aMCF, ARFs are not the direct target leading to the cytotoxic effects. The biochemical link between the activation of MCF and its cytotoxicity remains unknown. We explore how MCF activation leads to its disruption of host endocytic trafficking proteins. We examine how these proteins may be targeted and modified by MCF. Furthermore, we assess how the disruption of these host proteins ultimately leads to the dissolution of the endomembrane signaling network and the cytotoxicity we observe. This study begins to elucidate the biochemical activity of this important domain and gives insight into how it may promote disease progression. This work will be critical for advancing the understanding how these MARTX toxins function during Vv pathogenesis.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.226
Teacher spread0.218 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2022
Admission routes1
Has abstractyes

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