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Record W4235282642 · doi:10.21203/rs.3.rs-40780/v2

Decoding semi-automated title-abstract screening: a retrospective exploration of the review, study, and publication characteristics associated with accurate relevance predictions

2020· preprint· en· W4235282642 on OpenAlexaff
Allison Gates, Michelle Gates, Daniel DaRosa, Sarah A. Elliott, Jennifer Pillay, Sholeh Rahman, Ben Vandermeer, Lisa Hartling

Bibliographic record

VenueResearch Square · 2020
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBiomedical Text Mining and Ontologies
Canadian institutionsUniversity of Alberta
Fundersnot available
KeywordsRelevance (law)Decoding methodsInformation retrievalComputer scienceData scienceAlgorithmPolitical science

Abstract

fetched live from OpenAlex

Abstract Background. We evaluated the benefits and risks of using the Abstrackr machine learning (ML) tool to semi-automate title-abstract screening, and explored whether Abstrackr’s predictions varied by review or study-level characteristics. Methods. For a convenient sample of 16 reviews for which adequate data were available to address our objectives (11 systematic reviews and 5 rapid reviews) we screened a 200-record training set in Abstrackr and downloaded the relevance (relevant or irrelevant) of the remaining records, as predicted by the tool. We retrospectively simulated the liberal-accelerated screening approach. We estimated the time savings and proportion missed compared with dual independent screening. For reviews with pairwise meta-analyses, we evaluated changes to the pooled effects after removing the missed studies. We explored whether the tool’s predictions varied by review and study-level. Results. Using the ML-assisted liberal-accelerated approach, we wrongly excluded 0 to 3 (0 to 14%) records that were included in the final reports, but saved a median (IQR) 26 (9, 42) hours of screening time. One missed study was included in eight pairwise meta-analyses in one systematic review. The pooled effect for just one of those meta-analyses changed considerably (from MD (95% CI) -1.53 (-2.92, -0.15) to -1.17 (-2.70, 0.36)). Of 802 records in the final reports, 87% were correctly predicted as relevant. The correctness of the predictions did not differ by review (systematic or rapid, P=0.37) or intervention type (simple or complex, P=0.47). The predictions were more often correct in reviews with multiple (89%) vs. single (83%) research questions (P=0.01), or that included only trials (95%) vs. multiple designs (86%) (P=0.003). At the study level, trials (91%), mixed methods (100%), and qualitative (93%) studies were more often correctly predicted as relevant compared with observational studies (79%) or reviews (83%) (P=0.0006). Studies at high or unclear (88%) vs. low risk of bias (80%) (P=0.039), and those published more recently (mean (SD) 2008 (7) vs. 2006 (10), P=0.02) were more often correctly predicted as relevant. Conclusion. Our screening approach saved time and may be suitable in conditions where the limited risk of missing relevant records is acceptable. As several of our findings are paradoxical, and require further study to fully understand the tasks to which ML-assisted screening is best suited.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.005
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.673
Threshold uncertainty score0.559

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.005
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.107
GPT teacher head0.399
Teacher spread0.291 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2020
Admission routes1
Has abstractyes

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