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Record W4283789749 · doi:10.1016/j.healun.2022.06.021

Lung allograft standardized histological analysis (LASHA) template: A research consensus proposal

2022· article· en· W4283789749 on OpenAlexaff
Fiorella Calabrese, Anja C. Roden, Elizabeth N. Pavlisko, Francesca Lunardi, Desley Neil, Benjamin Adam, David Hwang, Martin Goddard, Gerald J. Berry, Marina Ivanovic, Jan H. von der Thüsen, Laure Gibault, Chieh‐Yu Lin, Katharina Wassilew, Carolyn Glass, Glen Westall, Adriana Zeevi, Deborah J. Levine, Antoine Roux

Bibliographic record

VenueThe Journal of Heart and Lung Transplantation · 2022
Typearticle
Languageen
FieldMedicine
TopicTransplantation: Methods and Outcomes
Canadian institutionsUniversity of TorontoUniversity Health NetworkUniversity of Alberta
Fundersnot available
KeywordsPulmonologistsMedicineStandardizationGrading (engineering)Lung transplantationPathologyTransplantationMedical physicsLungModalitiesIntensive care medicineSurgeryComputer scienceInternal medicineBiology

Abstract

fetched live from OpenAlex

BACKGROUND: Routine monitoring of lung-transplanted patients is crucial for the identification of immunological and non-immunological complications. Determining the etiology of acute allograft dysfunction, particularly in alloimmune-mediated disorders, relies heavily on the lung biopsy with histopathologic analysis. Standardization of the pathologic diagnosis of rejection (e.g., cellular and antibody-mediated) is based on consensus statements and guidelines, indicating the importance of a multidisciplinary approach to achieve a definitive etiological diagnosis. In addition to these statements and guidelines, refinements and standardizations are feasible through systematic analysis morphological, immunophenotypic and molecular alterations observed in transbronchial biopsies. This study is to identify key morphologic features to be assessed, select consistent and reproducible terminology for each histological feature, and provide standardized definitions for pathological assessment and grading. METHODS: A template was created by experts in lung transplantation including pathologists, pulmonologists, immunologists. An initial draft was circulated, followed by discussions and multiple revisions by email and conference calls. RESULTS: The "lung allograft standardized histological analysis - LASHA" template was created and structured as multiple-choice questions with number of fields to be filled in to allow for standardization of results and easy transfer into a future electronic spreadsheet. CONCLUSION: This template will help facilitate multicenter studies through a uniform protocol and correlations with new diagnostic modalities. After validation in large-scale studies, an optimized template could be included in routine clinical practice to enhance graft assessment and medical decision-making.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.256
metaresearch head score (Gemma)0.267
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.256
Threshold uncertainty score0.917

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.2560.267
Meta-epidemiology (narrow)0.0020.002
Meta-epidemiology (broad)0.0030.006
Bibliometrics0.0080.004
Science and technology studies0.0030.005
Scholarly communication0.0070.006
Open science0.0090.010
Research integrity0.0100.009
Insufficient payload (model declined to judge)0.0080.010

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.051
GPT teacher head0.399
Teacher spread0.348 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designTheoretical or conceptual
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations17
Published2022
Admission routes1
Has abstractyes

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