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Record W4289948950 · doi:10.1016/j.nicl.2022.103144

Detection of emerging neurodegeneration using Bayesian linear mixed-effect modeling

2022· article· en· W4289948950 on OpenAlexfundno aff
Yann Cobigo, Matthew S. Goh, Amy Wolf, Adam M. Staffaroni, John Kornak, Bruce L. Miller, Gil D. Rabinovici, William W. Seeley, Salvatore Spina, Adam L. Boxer, Bradley F. Boeve, Lei Wang, Ricardo Allegri, Marty Farlow, Hiroshi Mori, Richard J. Perrin, Joel H. Kramer, Howard J. Rosen

Bibliographic record

VenueNeuroImage Clinical · 2022
Typearticle
Languageen
FieldNeuroscience
TopicFunctional Brain Connectivity Studies
Canadian institutionsnot available
FundersJanssen Research and DevelopmentNational Institute on AgingNational Institute of Biomedical Imaging and BioengineeringCanadian Institutes of Health ResearchSchool of Public Health, University of California BerkeleyAllerganNational Institute of Neurological Disorders and StrokeIXICOServierH. Lundbeck A/SDeutsches Zentrum für Neurodegenerative ErkrankungenEisaiKorea Health Industry Development InstituteVoyager TherapeuticsNorthern California Institute for Research and EducationJapan Agency for Medical Research and DevelopmentPfizerBiogenBioClinicaWeill Institute for Neurosciences, University of California, San FranciscoFleniTakeda Pharmaceuticals U.S.A.AbbVieJohnson and JohnsonVerily Life SciencesMeso Scale DiagnosticsTeva Pharmaceutical IndustriesUniversity of Southern CaliforniaCelgeneMerckGlaxoSmithKlineNovartis Pharmaceuticals CorporationNational Institutes of HealthAssociation for Frontotemporal DegenerationU.S. Department of DefenseEli Lilly and CompanyBristol-Myers SquibbGE HealthcareAlzheimer's Disease Neuroimaging InitiativeSanofiFujirebio USAlzheimer's AssociationF. Hoffmann-La RocheGenentechLarry L. Hillblom FoundationHDL TherapeuticsMichael J. Fox Foundation for Parkinson's Research
KeywordsNeurodegenerationBayesian probabilityComputer scienceArtificial intelligenceMedicineDiseaseInternal medicine

Abstract

fetched live from OpenAlex

Early detection of neurodegeneration, and prediction of when neurodegenerative diseases will lead to symptoms, are critical for developing and initiating disease modifying treatments for these disorders. While each neurodegenerative disease has a typical pattern of early changes in the brain, these disorders are heterogeneous, and early manifestations can vary greatly across people. Methods for detecting emerging neurodegeneration in any part of the brain are therefore needed. Prior publications have described the use of Bayesian linear mixed-effects (BLME) modeling for characterizing the trajectory of change across the brain in healthy controls and patients with neurodegenerative disease. Here, we use an extension of such a model to detect emerging neurodegeneration in cognitively healthy individuals at risk for dementia. We use BLME to quantify individualized rates of volume loss across the cerebral cortex from the first two MRIs in each person and then extend the BLME model to predict future values for each voxel. We then compare observed values at subsequent time points with the values that were expected from the initial rates of change and identify voxels that are lower than the expected values, indicating accelerated volume loss and neurodegeneration. We apply the model to longitudinal imaging data from cognitively normal participants in the Alzheimer's Disease Neuroimaging Initiative (ADNI), some of whom subsequently developed dementia, and two cognitively normal cases who developed pathology-proven frontotemporal lobar degeneration (FTLD). These analyses identified regions of accelerated volume loss prior to or accompanying the earliest symptoms, and expanding across the brain over time, in all cases. The changes were detected in regions that are typical for the likely diseases affecting each patient, including medial temporal regions in patients at risk for Alzheimer's disease, and insular, frontal, and/or anterior/inferior temporal regions in patients with likely or proven FTLD. In the cases where detailed histories were available, the first regions identified were consistent with early symptoms. Furthermore, survival analysis in the ADNI cases demonstrated that the rate of spread of accelerated volume loss across the brain was a statistically significant predictor of time to conversion to dementia. This method for detection of neurodegeneration is a potentially promising approach for identifying early changes due to a variety of diseases, without prior assumptions about what regions are most likely to be affected first in an individual.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.016
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.655
Threshold uncertainty score0.992

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.016
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.121
GPT teacher head0.368
Teacher spread0.247 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations8
Published2022
Admission routes1
Has abstractyes

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