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Record W4296299315 · doi:10.26685/urncst.395

Effects of Procainamide on CTLA-4 and CD28 Expression in Drug-Induced Lupus: A Research Protocol

2022· article· en· W4296299315 on OpenAlexafffund
Rachel Kim, Nishaad C. Sheth

Bibliographic record

VenueUndergraduate Research in Natural and Clinical Science and Technology (URNCST) Journal · 2022
Typearticle
Languageen
FieldImmunology and Microbiology
TopicImmune Cell Function and Interaction
Canadian institutionsMcMaster UniversityQueen's University
FundersUniversity of Ottawa
KeywordsCD28ProcainamideSystemic lupus erythematosusCTLA-4ImmunologyAntigenBiologyMedicineMolecular biologyChemistryCancer researchT cellInternal medicineImmune systemDisease

Abstract

fetched live from OpenAlex

Introduction: Lupus erythematosus is a chronic autoimmune disease affecting over 5 million individuals worldwide, characterized by overactivation of B and T lymphocytes. Of these, 10% of patients are diagnosed with drug- induced lupus (DIL), which is caused by high doses of medications such as procainamide, with 20% of procainamide users developing DIL. CTLA-4 and CD28 receptors on T-cell surfaces bind to B7 proteins on antigen-presenting cells, halting and promoting T-cell activation, respectively. Studies indicate that certain lupus symptoms are linked to abnormal CTLA-4/CD28 expression, resulting in overreactive CD4+ T-cells. However, the exact nature of the relationship between CTLA-4 and lupus remains nonunanimous. Other studies show that procainamide alters DNA methylation7, while altered CTLA-4 methylation has been tied to autoimmune disorders. Thus, we hypothesize that procainamide leads to reduced CTLA-4 expression and/or increased CD28 expression, causing DIL symptoms. Methods: We propose an in vivo experiment involving time-matched mouse models. CITE-seq analyses would be run on isolated T-cells from the splenic samples to obtain transcriptome and epitope data and to examine the expression of CTLA-4, CD28, and other potential genes of interest. To corroborate CITE-seq results, the T-cells would undergo immunohistochemical staining with primary and fluorescent antibodies that bind to CTLA-4/CD28. Expected Results: Results are expected to indicate decreased CTLA-4 gene and protein expression, or increased CD28 gene and protein expression on the surface of procainamide-treated T-cells. Discussion: If our analyses prove successful, potential next steps involve using gene editing technologies to screen, pinpoint, and correct the molecular mechanisms implicated in procainamide-induced DIL. Further analysis may also implicate additional or other genes of interest involved in the etiology of the disease. Conclusion: This study is expected to provide insight into the effect of procainamide on molecular mechanisms involved in DIL. Further applications may involve adjunct therapies aimed at mitigating or preventing the development of DIL symptoms.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Protocol · Consensus signal: none
Teacher disagreement score0.018
Threshold uncertainty score0.061

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.001
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0020.002
Bibliometrics0.0010.001
Science and technology studies0.0010.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0180.004

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.048
GPT teacher head0.420
Teacher spread0.371 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreProtocol

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2022
Admission routes2
Has abstractyes

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