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Record W4317497443 · doi:10.1101/2023.01.16.524331

Bridging Big Data: Procedures for Combining Non-equivalent Cognitive Measures from the ENIGMA Consortium

2023· preprint· en· W4317497443 on OpenAlexaff
Eamonn Kennedy, Shashank Vadlamani, Hannah M. Lindsey, Pui‐Wa Lei, Mary Jo Pugh, Maheen M. Adamson, Martin Alda, Sílvia Alonso-Lana, Sonia Ambrogi, Tim Anderson, Celso Arango, Robert F. Asarnow, Mihai Avram, Rosa Ayesa‐Arriola, Talin Babikian, Nerisa Banaj, Laura Bird, Stefan Borgwardt, Amy Brodtmann, Katharina Brosch, Karen Caeyenberghs, Vince D. Calhoun, Nancy D. Chiaravalloti, David X. Cifu, Benedicto Crespo‐Facorro, John C. Dalrymple‐Alford, Kristen Dams-O’Connor, Udo Dannlowski, David Darby, Nicholas D. Davenport, John DeLuca, Covadonga M. Díaz‐Caneja, Seth G. Disner, Ekaterina Dobryakova, Stefan Ehrlich, Carrie Esopenko, Fabio Ferrarelli, Lea E. Frank, Carol E. Franz, Paola Fuentes‐Claramonte, Helen M. Genova, Christopher C. Giza, Janik Goltermann, Dominik Grotegerd, Marius Gruber, Alfonso Gutiérrez‐Zotes, Minji Ha, Jan Haavik, Charles H. Hinkin, Kristen R. Hoskinson, Daniela Hubl, Andrei Irimia, Andreas Jansen, Michael Kaess, Xiaojian Kang, Kimbra Kenney, Barbora Keřková, Mohamed Salah Khlif, Minah Kim, Jochen Kindler, Tilo Kircher, Karolína Knížková, Knut K. Kolskår, Denise Krch, William S. Kremen, Taylor Kuhn, Veena Kumari, Jun Soo Kwon, Sarah Laskowitz, Jungha Lee, Jean Lengenfelder, Spencer W. Liebel, Victoria Liou‐Johnson, Sara M. Lippa, Marianne Løvstad, Astri J. Lundervold, Cassandra Marotta, Craig A. Marquardt, Paulo Mattos, Ahmad Mayeli, Carrie R. McDonald, Susanne Meinert, Tracy R. Melzer, Jessica Merchán‐Naranjo, Chantal Michel, Rajendra A. Morey, Benson Mwangi, Daniel J. Myall, Igor Nenadić, Mary R. Newsome, Abraham Nunes, Terence J. O’Brien, Viola Oertel, John Ollinger, Alexander Olsen, Víctor Ortiz‐García de la Foz, Mustafa Ozmen, Heath Pardoe, Marise B. Parent, Fabrizio Piras, Federica Piras, Edith Pomarol‐Clotet, Jonathan Repple, Geneviève Richard, Jonathan Rodríguez, Mabel Rodríguez, Kelly Rootes-Murdy, Jared A. Rowland, Nicholas P. Ryan, Raymond Salvador, Anne‐Marthe Sanders, André Schmidt, Jair C. Soares, Gianfranco Spalleta, Filip Španiel, Alena Stasenko, Frederike Stein, Benjamin Straube, April D. Thames, Florian Thomas‐Odenthal, Sophia I. Thomopoulos, Erin B. Tone, Ivan J. Torres, Maya Troyanskaya, Jessica A. Turner, Kristine M. Ulrichsen, Guillermo E. Umpierrez, Elisabet Vilella, Lucy Vivash, William C. Walker, Emilio Werden, Lars T. Westlye, Krista Wild, Adrian Wroblewski, Mon‐Ju Wu, Glenn R. Wylie, Lakshmi N. Yatham, Giovana Zunta‐Soares, Paul M. Thompson, David F. Tate, Frank G. Hillary, Emily L. Dennis, Elisabeth A. Wilde

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2023
Typepreprint
Languageen
FieldNeuroscience
TopicFunctional Brain Connectivity Studies
Canadian institutionsBC Mental Health & Substance Use ServicesUniversity of British ColumbiaDalhousie University
Fundersnot available
KeywordsHarmonizationCovariateRepresentativeness heuristicRaw dataComputer scienceBig dataReplication (statistics)Data scienceBayesian probabilitySample size determinationBayes' theoremEconometricsData miningStatisticsMachine learningArtificial intelligenceMathematics

Abstract

fetched live from OpenAlex

Investigators in neuroscience have turned to Big Data to address replication and reliability issues by increasing sample sizes, statistical power, and representativeness of data. These efforts unveil new questions about integrating data arising from distinct sources and instruments. We focus on the most frequently assessed cognitive domain - memory testing - and demonstrate a process for reliable data harmonization across three common measures. We aggregated global raw data from 53 studies totaling N = 10,505 individuals. A mega-analysis was conducted using empirical bayes harmonization to remove site effects, followed by linear models adjusting for common covariates. A continuous item response theory (IRT) model estimated each individual's latent verbal learning ability while accounting for item difficulties. Harmonization significantly reduced inter-site variance while preserving covariate effects, and our conversion tool is freely available online. This demonstrates that large-scale data sharing and harmonization initiatives can address reproducibility and integration challenges across the behavioral sciences.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.204
metaresearch head score (Gemma)0.440
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesMetaresearch
DomainCandidate signal: Methods · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.796
Threshold uncertainty score0.981

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.2040.440
Meta-epidemiology (narrow)0.0040.004
Meta-epidemiology (broad)0.0030.009
Bibliometrics0.0250.025
Science and technology studies0.0040.006
Scholarly communication0.0150.010
Open science0.0060.025
Research integrity0.0030.008
Insufficient payload (model declined to judge)0.0290.009

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.127
GPT teacher head0.286
Teacher spread0.160 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; the direct Gemma label and the distilled Codex classifier agree on what is shown here.

Study designSimulation or modeling
DomainMethods
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations6
Published2023
Admission routes1
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)→Same topicFunctional Brain Connectivity Studies→French-language works237,207→