MétaCan
Menu
Back to cohort
Record W4318169184 · doi:10.1128/msphere.00034-23

Virology under the Microscope—a Call for Rational Discourse

2023· article· en· W4318169184 on OpenAlexafffund
Felicia Goodrum, Anice C. Lowen, Seema S. Lakdawala, James C. Alwine, Arturo Casadevall, Michael J. Imperiale, Walter J. Atwood, Daphne C. Avgousti, Joel D. Baines, Bruce W. Banfield, Lawrence Banks, Sumita Bhaduri‐McIntosh, Deepta Bhattacharya, Daniel Blanco-Melo, David C. Bloom, Adrianus C. M. Boon, Steeve Boulant, Curtis R. Brandt, Andrew J. Broadbent, Christopher B. Brooke, Craig Cameron, Samuel K. Campos, Patrizia Caposio, Gary C. Chan, Anna R. Cliffe, John M. Coffin, Kathleen L. Collins, Blossom Damania, Matthew D. Daugherty, Kari Debbink, James A. DeCaprio, Terence S. Dermody, Jimmy D. Dikeakos, Daniel DiMaio, Rhoel R. Dinglasan, W. Paul Duprex, Rebecca Dutch, Nels C. Elde, Michael Emerman, Lynn W. Enquist, Bentley A. Fane, Ana Fernández-Sesma, Michelle L. Flenniken, Lori Frappier, Matthew B. Frieman, Klaus Frueh, Michaela U. Gack, Marta Gaglia, Tom Gallagher, Denise Galloway, Adolfo García‐Sastre, Adam P. Geballe, Britt A. Glaunsinger, Stephen P. Goff, Alexander L. Greninger, Meaghan H. Hancock, Eva Harris, Nicholas S. Heaton, Mark T. Heise, Ekaterina E. Heldwein, Brenda G. Hogue, Stacy M. Horner, Edward Hutchinson, Joseph M. Hyser, William T. Jackson, Robert F. Kalejta, Jeremy P. Kamil, Stephanie M. Karst, Frank Kirchhoff, David M. Knipe, Timothy F. Kowalik, Michael Lagunoff, Laimonis A. Laimins, Ryan A. Langlois, Adam S. Lauring, Benhur Lee, David A. Leib, Shan‐Lu Liu, Richard Longnecker, Carolina B. López, Micah A. Luftig, Jennifer M. Lund, Balaji Manicassamy, Grant McFadden, Michael T. McIntosh, Andrew Mehle, W. Allen Miller, Ian Mohr, Cary A. Moody, Nathaniel J. Moorman, Anne Moscona, Bryan C. Mounce, Joshua Munger, Karl Münger, Eain A. Murphy, Mojgan H. Naghavi, Jay A. Nelson, Christopher J. Neufeldt, Janko Nikolich, Christine M. O’Connor, Akira Ono, Walter A. Orenstein, David A. Ornelles, Jing‐hsiung James Ou, John S. L. Parker, Colin R. Parrish, Andrew Pekosz, Philip E. Pellett, Julie K. Pfeiffer, Richard K. Plemper, Stephen J. Polyak, John G. Purdy, Dohun Pyeon, Miguel E. Quiñones‐Mateu, Rolf Renne, Charles M. Rice, John W. Schoggins, Richard J. Roller, Charles J. Russell, Rozanne M. Sandri-Goldin, Martin Sapp, Luis M. Schang, Scott Schmid, Stacey Schultz‐Cherry, Bert L. Semler, Thomas Shenk, Guido Silvestri, Viviana Simon, Gregory A. Smith, Jason G. Smith, Katherine R. Spindler, Megan L. Stanifer, Kanta Subbarao, Wesley I. Sundquist, Mehul S. Suthar, Troy C. Sutton, Andrew W. Tai, Vera L. Tarakanova, Benjamin R. tenOever, Scott A. Tibbetts, S. Mark Tompkins, Zsolt Tóth, Koenraad Van Doorslaer, Marco Vignuzzi, Nicholas A. Wallace, Derek Walsh, Michael P. Weekes, Jason B. Weinberg, Matthew D. Weitzman, Sandra K. Weller, Sean P. J. Whelan, Elizabeth White, Bryan R.G. Williams, Christiane E. Wobus, Scott W. Wong, Andrew D. Yurochko

Bibliographic record

VenuemSphere · 2023
Typearticle
Languageen
FieldMedicine
TopicViral gastroenteritis research and epidemiology
Canadian institutionsUniversity of TorontoWestern UniversityQueen's University
FundersNational Institute of Dental and Craniofacial ResearchNational Institute of Allergy and Infectious DiseasesNational Institute of General Medical SciencesBiotechnology and Biological Sciences Research CouncilMedical Research CouncilCanadian Institutes of Health ResearchPlant Sciences Institute, Iowa State UniversityAdvanced Research Projects AgencyDefense Advanced Research Projects AgencyNatural Sciences and Engineering Research Council of CanadaPfizerModernaCenters for Disease Control and PreventionZoetisNovavaxIowa State UniversityGlaxoSmithKlineDirectorate for Biological SciencesNational Institutes of HealthAssociazione Italiana per la Ricerca sul CancroU.S. Department of DefenseEli Lilly and CompanyFast GrantsUnited States Agency for International DevelopmentBiomedical Advanced Research and Development AuthorityOhio State UniversityDeutsche ForschungsgemeinschaftNational Science FoundationUK Research and InnovationAstraZenecaBill and Melinda Gates FoundationCoalition for Epidemic Preparedness InnovationsNational Cancer InstituteGilead SciencesU.S. Department of Agriculture
KeywordsImmunosuppressionHumanityVirologyCoronavirus disease 2019 (COVID-19)Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)DiseaseMedicine2019-20 coronavirus outbreakImmunologyInfectious disease (medical specialty)PathologyPolitical science

Abstract

fetched live from OpenAlex

Viruses have brought humanity many challenges: respiratory infection, cancer, neurological impairment and immunosuppression to name a few. Virology research over the last 60+ years has responded to reduce this disease burden with vaccines and antivirals. Despite this long history, the COVID-19 pandemic has brought unprecedented attention to the field of virology. Some of this attention is focused on concern about the safe conduct of research with human pathogens. A small but vocal group of individuals has seized upon these concerns - conflating legitimate questions about safely conducting virus-related research with uncertainties over the origins of SARS-CoV-2. The result has fueled public confusion and, in many instances, ill-informed condemnation of virology. With this article, we seek to promote a return to rational discourse. We explain the use of gain-of-function approaches in science, discuss the possible origins of SARS-CoV-2 and outline current regulatory structures that provide oversight for virological research in the United States. By offering our expertise, we - a broad group of working virologists - seek to aid policy makers in navigating these controversial issues. Balanced, evidence-based discourse is essential to addressing public concern while maintaining and expanding much-needed research in virology.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.536
Threshold uncertainty score0.402

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.047
GPT teacher head0.393
Teacher spread0.346 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations10
Published2023
Admission routes2
Has abstractyes

Explore more

Same venuemSphereSame topicViral gastroenteritis research and epidemiologyFrench-language works237,207