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Record W4365143915 · doi:10.1038/s41591-023-02232-8

Body composition and lung cancer-associated cachexia in TRACERx

2023· article· en· W4365143915 on OpenAlexaff
Othman Al‐Sawaf, Jakob Weiss, Marcin Skrzypski, Jie Min Lam, Takahiro Karasaki, Francisco Zambrana, Andrew Kidd, Alexander M. Frankell, Thomas B.K. Watkins, Carlos Martínez‐Ruiz, Clare Puttick, James R. Black, Ariana Huebner, Maise Al Bakir, Mateo Sokač, Susie M. Collins, Selvaraju Veeriah, Neil Magno, Cristina Naceur‐Lombardelli, Paulina Prymas, Antonia Toncheva, Sophia Ward, Nick Jayanth, Roberto Salgado, Christopher P. Bridge, David C. Christiani, Raymond H. Mak, Camden Bay, Michael H. Rosenthal, Naveed Sattar, Paul Welsh, Ying Liu, Norbert Perrimon, Karteek Popuri, Mirza Faisal Beg, Nicholas McGranahan, Allan Hackshaw, Danna M. Breen, Stephen O’Rahilly, Nicolai J. Birkbak, Hugo J.W.L. Aerts, J.F. Lester, Amrita Bajaj, Apostolos Nakas, Azmina Sodha-Ramdeen, Keng Ang, Mohamad Tufail, Mohammed Fiyaz Chowdhry, Molly Scotland, Rebecca Boyles, Sridhar Rathinam, Claire Wilson, Domenic Marrone, Sean Dulloo, Dean A. Fennell, Gurdeep Matharu, Jacqui Shaw, Joan Riley, Lindsay Primrose, Ekaterini Boleti, Heather Cheyne, Mohammed Khalil, Shirley Richardson, Tracey Cruickshank, Gillian Price, Keith M. Kerr, Sarah Benafif, Kayleigh Gilbert, Babu Naidu, Akshay J. Patel, Aya Osman, Christer Lacson, Gerald Langman, Helen Shackleford, Madava Djearaman, Salma Kadiri, Gary Middleton, Angela Leek, Jack Davies Hodgkinson, Nicola Totten, Ángeles Montero, Elaine Smith, Eustace Fontaine, Felice Granato, Helen Doran, Juliette Novasio, Kendadai Rammohan, Leena Dennis Joseph, Rajesh Shah, Stuart Moss, Vijay Joshi, Philip Crosbie, Fábio Gomes, Kate Brown, Mathew Carter, Anshuman Chaturvedi, Lynsey Priest, Pedro Oliveira, Colin R. Lindsay, Fiona Blackhall, Matthew Krebs, Yvonne Summers, Alexandra Clipson, Jonathan Tugwood, Alastair Kerr, Dominic G. Rothwell, Elaine Kilgour, Caroline Dive, Roland F. Schwarz, Tom L. Kaufmann, Gareth A. Wilson, Rachel Rosenthal, Peter Van Loo, Zoltán Szállási, Judit Kisistók, Miklós Dióssy, Jonas Demeulemeester, Abigail Bunkum, Alastair Magness, Andrew Rowan, Angeliki Karamani, Benny Chain, Brittany Campbell, Carla Castignani, Chris Bailey, Christopher Abbosh, Clare E. Weeden, Claudia Lee, Corentin Richard, Crispin T. Hiley, David A. Moore, David R. Pearce, Despoina Karagianni, Dhruva Biswas, Dina Levi, Elena Hoxha, Elizabeth Larose Cadieux, Emilia L. Lim, Emma Colliver, Emma Nye, Eva Grönroos, Felip Gálvez-Cancino, Foteini Athanasopoulou, Francisco Gimeno-Valiente, George Kassiotis, Georgia Stavrou, Gerasimos Mastrokalos, Hao-Ran Zhai, Helen L. Lowe, Ignacio Matos, Jacki Goldman, James L. Reading, Javier Herrero, Jayant K. Rane, Jérôme Nicod, John A. Hartley, Karl S. Peggs, Katey S.S. Enfield, Kayalvizhi Selvaraju, Kerstin Thol, Kevin Litchfield, Kevin W. Ng, Kezhong Chen, Krijn K. Dijkstra, Kristiana Grigoriadis, Krupa Thakkar, Leah Ensell, Mansi Shah, Marcos Vasquez Duran, Maria Litovchenko, Mariana Werner Sunderland, Mark S. Hill, Michelle Dietzen, Michelle Leung, Mickael Escudero, Mihaela Angelova, Miljana Tanić, Monica Sivakumar, Nnennaya Kanu, Olga Chervova, Olivia Lucas, Oriol Pich, Philip Hobson, Piotr Pawlik, Richard Stone, Robert B. Bentham, Robert E. Hynds, Roberto Vendramin, Sadegh Saghafinia, Saioa López, Samuel Gamble, Seng Kuong Anakin Ung, Sergio A. Quezada, Sharon Vanloo, Simone Zaccaria, Sonya Hessey, Stefan Boeing, Stephan Beck, Supreet Kaur Bola, Tamara Denner, Teresa Marafioti, Thanos P. Mourikis, Victoria J. Spanswick, Vittorio Barbè, Wei-Ting Lu, William Hill, Wing Kin Liu, Yin Wu, Yutaka Naito, Zoe Ramsden, Catarina Veiga, Gary Royle, Charles‐Antoine Collins‐Fekete, Francesco Fraioli, Paul Ashford, Tristan Clark, Martin Förster, Siow Ming Lee, Elaine Borg, Mary Falzon, Dionysis Papadatos-Pastos, James M. Wilson, Tanya Ahmad, Alexander James Procter, Asia Ahmed, Magali N. Taylor, Arjun Nair, David Lawrence, Davide Patrini, Neal Navani, Ricky M. Thakrar, Sam M. Janes, Emilie Martinoni Hoogenboom, Fleur Monk, James W. Holding, Junaid Choudhary, Kunal Bhakhri, Marco Scarci, Nikolaos Panagiotopoulos, Pat Gorman, Reena Khiroya, Robert Stephens, Yien Ning Sophia Wong, Steve Bandula, Abigail Sharp, Sean Smith, Nicole Gower, Harjot Kaur Dhanda, Kitty S. Chan, Camilla Pilotti, Rachel Leslie, Anca Grapa, Hanyun Zhang, Khalid AbdulJabbar, Xiaoxi Pan, Yinyin Yuan, David Chuter, Mairead MacKenzie, Serena Chee, Aiman Alzetani, Judith Cave, Lydia Scarlett, Jennifer Richards, Papawadee Ingram, Silvia Austin, Eric Lim, Paulo De Sousa, Simon Jordan, Alexandra Rice, Hilgardt Raubenheimer, Harshil Bhayani, Lyn Ambrose, Anand Devaraj, Hema Chavan, Sofina Begum, Silviu Buderi, Daniel Kaniu, Mpho Malima, Sarah Booth, Andrew G. Nicholson, Nadia Fernandes, Pratibha Shah, Chiara Proli, Madeleine Hewish, Sarah Danson, Michael Shackcloth, Lily Robinson, Peter Russell, Kevin G. Blyth, Craig Dick, John Le Quesne, Mo Asif, Rocco Bilancia, Nikos Kostoulas, Mathew Thomas, Mariam Jamal‐Hanjani, Charles Swanton

Bibliographic record

VenueNature Medicine · 2023
Typearticle
Languageen
FieldMedicine
TopicNutrition and Health in Aging
Canadian institutionsSimon Fraser UniversityMemorial University of Newfoundland
FundersFP7 People: Marie-Curie ActionsMedical Research CouncilPfizer UKGenentechGdański Uniwersytet MedycznyNovo Nordisk FondenUniversity College London Hospitals NHS Foundation TrustNIHR Cambridge Biomedical Research CentrePeter MacCallum Cancer CentreStand Up To CancerNovo NordiskDeutsche ForschungsgemeinschaftUniversity of GlasgowNational Institutes of HealthRosetrees TrustUniversity College LondonWellcome TrustCancer Research UKFoulkes FoundationFrancis Crick InstituteInstitut for Klinisk Medicin, Aarhus UniversitetInternational Association for the Study of Lung CancerBeiGeneNational Institute for Health and Care ResearchAarhus UniversitetshospitalNational Cancer InstituteGilead SciencesBrigham and Women's HospitalEuropean CommissionAarhus UniversitetBreast Cancer Research FoundationSanofiMassachusetts General HospitalGlaxoSmithKlineBristol-Myers SquibbOno PharmaceuticalLundbeckfondenEli Lilly and CompanyAstraZenecaAmgenPfizer
KeywordsCancer cachexiaCachexiaLung cancerMedicineComposition (language)CancerBiologyInternal medicine

Abstract

fetched live from OpenAlex

Cancer-associated cachexia (CAC) is a major contributor to morbidity and mortality in individuals with non-small cell lung cancer. Key features of CAC include alterations in body composition and body weight. Here, we explore the association between body composition and body weight with survival and delineate potential biological processes and mediators that contribute to the development of CAC. Computed tomography-based body composition analysis of 651 individuals in the TRACERx (TRAcking non-small cell lung Cancer Evolution through therapy (Rx)) study suggested that individuals in the bottom 20th percentile of the distribution of skeletal muscle or adipose tissue area at the time of lung cancer diagnosis, had significantly shorter lung cancer-specific survival and overall survival. This finding was validated in 420 individuals in the independent Boston Lung Cancer Study. Individuals classified as having developed CAC according to one or more features at relapse encompassing loss of adipose or muscle tissue, or body mass index-adjusted weight loss were found to have distinct tumor genomic and transcriptomic profiles compared with individuals who did not develop such features. Primary non-small cell lung cancers from individuals who developed CAC were characterized by enrichment of inflammatory signaling and epithelial-mesenchymal transitional pathways, and differentially expressed genes upregulated in these tumors included cancer-testis antigen MAGEA6 and matrix metalloproteinases, such as ADAMTS3. In an exploratory proteomic analysis of circulating putative mediators of cachexia performed in a subset of 110 individuals from TRACERx, a significant association between circulating GDF15 and loss of body weight, skeletal muscle and adipose tissue was identified at relapse, supporting the potential therapeutic relevance of targeting GDF15 in the management of CAC.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.397
Threshold uncertainty score0.376

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.397
Teacher spread0.377 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations126
Published2023
Admission routes1
Has abstractyes

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