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Record W4372294498 · doi:10.1038/s41467-023-37194-5

Clarifying the effect of biodiversity on productivity in natural ecosystems with longitudinal data and methods for causal inference

2023· article· en· W4372294498 on OpenAlexaff
Laura E. Dee, Paul J. Ferraro, Christopher N. Severen, Kaitlin Kimmel, Elizabeth T. Borer, Jarrett E. K. Byrnes, Adam Thomas Clark, Yann Hautier, Andy Hector, Xavier Raynaud, Peter B. Reich, Alexandra J. Wright, Carlos Alberto Arnillas, Kendi F. Davies, Andrew MacDougall, Akira Mori, Melinda D. Smith, Peter B. Adler, Jonathan D. Bakker, Kate A. Brauman, Jane Cowles, Kimberly J. Komatsu, Johannes M. H. Knops, Rebecca L. McCulley, Joslin L. Moore, John W. Morgan, Timothy Ohlert, Sally A. Power, Lauren L. Sullivan, Carly Stevens, Michel Loreau

Bibliographic record

VenueNature Communications · 2023
Typearticle
Languageen
FieldEnvironmental Science
TopicEcology and Vegetation Dynamics Studies
Canadian institutionsUniversity of GuelphThe Scarborough HospitalUniversity of Toronto
FundersNational Aeronautics and Space AdministrationAgence Nationale de la RechercheNational Science Foundation
KeywordsObservational studySpecies richnessBiodiversityCausal inferenceProductivityConfoundingEcologyEcosystemInferenceNatural experimentBiologyEconometricsComputer scienceEconomicsStatisticsMathematicsArtificial intelligence

Abstract

fetched live from OpenAlex

Causal effects of biodiversity on ecosystem functions can be estimated using experimental or observational designs - designs that pose a tradeoff between drawing credible causal inferences from correlations and drawing generalizable inferences. Here, we develop a design that reduces this tradeoff and revisits the question of how plant species diversity affects productivity. Our design leverages longitudinal data from 43 grasslands in 11 countries and approaches borrowed from fields outside of ecology to draw causal inferences from observational data. Contrary to many prior studies, we estimate that increases in plot-level species richness caused productivity to decline: a 10% increase in richness decreased productivity by 2.4%, 95% CI [-4.1, -0.74]. This contradiction stems from two sources. First, prior observational studies incompletely control for confounding factors. Second, most experiments plant fewer rare and non-native species than exist in nature. Although increases in native, dominant species increased productivity, increases in rare and non-native species decreased productivity, making the average effect negative in our study. By reducing the tradeoff between experimental and observational designs, our study demonstrates how observational studies can complement prior ecological experiments and inform future ones.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.219
metaresearch head score (Gemma)0.414
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.219
Threshold uncertainty score0.963

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.2190.414
Meta-epidemiology (narrow)0.0020.002
Meta-epidemiology (broad)0.0020.004
Bibliometrics0.0030.003
Science and technology studies0.0020.006
Scholarly communication0.0040.006
Open science0.0030.006
Research integrity0.0030.005
Insufficient payload (model declined to judge)0.0060.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.048
GPT teacher head0.379
Teacher spread0.331 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations126
Published2023
Admission routes1
Has abstractyes

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Same venueNature CommunicationsSame topicEcology and Vegetation Dynamics StudiesFrench-language works237,207