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Record W4383620165 · doi:10.1208/s12248-023-00830-5

Neutralizing Antibody Validation Testing and Reporting Harmonization

2023· article· en· W4383620165 on OpenAlexaff
Heather Myler, João Pedras-Vasconcelos, Todd Lester, Francesca Civoli, Weifeng Xu, Bonnie Wu, Inna Vainshtein, Linlin Luo, Mohamed Hassanein, Susana Liu, Swarna Suba Ramaswamy, Johanna Mora, Jason Pennucci, Fred McCush, Amy Lavelle, Darshana Jani, Angela L. Ambakhutwala, Daniel Baltrukonis, Breann Barker, Rebecca Carmean, Shan Chung, Sheng Dai, Stephen DeWall, Sanjay L. Dholakiya, Robert Dodge, Deborah Finco, Haoheng Yan, Amanda Hays, Zheng Hu, Cynthia Inzano, Lynn Kamen, Ching‐Ha Lai, Erik Meyer, Robert Nelson, Amrit Paudel, Kelli R. Phillips, Marie-Eve Poupart, Qiang Qu, Mohsen Rajabi Abhari, Janka Ryding, Curtis Sheldon, Franklin Spriggs, Dominic Warrino, Yuling Wu, Lin Yang, Stephanie Pasas-Farmer

Bibliographic record

VenueThe AAPS Journal · 2023
Typearticle
Languageen
FieldImmunology and Microbiology
TopicBiosimilars and Bioanalytical Methods
Canadian institutionsPfizer (Canada)TransCanada (Canada)
FundersStrong
KeywordsHarmonizationImmunogenicityFood and drug administrationComputer scienceRobustness (evolution)MedicineRisk analysis (engineering)AntibodyChemistryImmunology

Abstract

fetched live from OpenAlex

Evolving immunogenicity assay performance expectations and a lack of harmonized neutralizing antibody validation testing and reporting tools have resulted in significant time spent by health authorities and sponsors on resolving filing queries. A team of experts within the American Association of Pharmaceutical Scientists' Therapeutic Product Immunogenicity Community across industry and the Food and Drug Administration addressed challenges unique to cell-based and non-cell-based neutralizing antibody assays. Harmonization of validation expectations and data reporting will facilitate filings to health authorities and are described in this manuscript. This team provides validation testing and reporting strategies and tools for the following assessments: (1) format selection; (2) cut point; (3) assay acceptance criteria; (4) control precision; (5) sensitivity including positive control selection and performance tracking; (6) negative control selection; (7) selectivity/specificity including matrix interference, hemolysis, lipemia, bilirubin, concomitant medications, and structurally similar analytes; (8) drug tolerance; (9) target tolerance; (10) sample stability; and (11) assay robustness.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.440
metaresearch head score (Gemma)0.330
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesMetaresearch
DomainCandidate signal: Reporting · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.560
Threshold uncertainty score0.690

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.4400.330
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0020.003
Bibliometrics0.0120.007
Science and technology studies0.0030.004
Scholarly communication0.0100.005
Open science0.0100.007
Research integrity0.0030.005
Insufficient payload (model declined to judge)0.0060.006

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.144
GPT teacher head0.381
Teacher spread0.238 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; the direct Gemma label and the distilled Codex classifier agree on what is shown here.

Study designNot applicable
DomainReporting
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations26
Published2023
Admission routes1
Has abstractyes

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Same venueThe AAPS JournalSame topicBiosimilars and Bioanalytical MethodsFrench-language works237,207