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Trisomy 8-associated Autoinflammatory Disease (TRIAD) is Characterized by Dysregulated Myeloid Cells

2023· article· en· W4385686612 on OpenAlexaff
Kalpana Manthiram, Qin Xu, Zhijie Wu, Mary Bowes, Shouguo Gao, Cihan Oguz, Abdel G. Elkahloun, Shelley S. Kalsi, Alina Dulau‐Florea, Tina Romeo, Lihong Shi, Thomas Cassini, Natalie Deuitch, Martha Kirby, Stacie M. Anderson, Deborah A. Bruns, Amanda K. Ombrello, Karyl S. Barron, Elaine F. Remmers, Frank X. Donovan, William Peterson, Jill Cochran, Ronald M. Laxer, Jessica Greenberg, Wadih M. Zein, Brian P. Brooks, Sandro Félix Perazzio, Isabelle Koné‐Paut, Nora Al-Mutiari, Valtýr Thors, Johanna Guðrún Pálmadóttir, Florence A. Aeschlimann, Pierre Quartier, Karen Murphy, Settara Chandrasekarappa, Troy R. Torgerson, Pamela L. Schwartzberg, Daniel L. Kastner

Bibliographic record

VenueThe Journal of Immunology · 2023
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicInflammatory Bowel Disease
Canadian institutionsUniversity of Toronto
Fundersnot available
KeywordsImmunologyMyeloidTrisomy 8BiologyTrisomyBone marrowKaryotypeGeneticsChromosomeGene

Abstract

fetched live from OpenAlex

Abstract Trisomy 8 mosaicism (T8M) has been associated with a Behçet’s-like inflammatory disease, but immunologic features and treatment responses are not well-characterized. Here, we characterize 20 individuals with constitutional T8M and inflammatory disease. Most participants had congenital dysmorphologies and developmental delay. Two developed hematologic malignancies, two had bleeding diathesis due to platelet dense granule deficiency, and most had macrocytosis. The majority had recurrent fever and severe oral ulcerations, while nearly half had genital ulcers or rash. Colchicine, apremilast, and IL-1 and TNFa inhibitors were effective therapies. With ddPCR on sorted cell populations, we found that cells from the myeloid lineage (monocytes, neutrophils, megakaryocytes, erythroid progenitors) had a significantly higher percentage of trisomy 8 mosaicism compared to those from the lymphoid lineage (T and B cells) in both the peripheral blood and bone marrow, suggesting that trisomy 8 is tolerated to a greater degree by myeloid cells. Furthermore, we found that participants with T8M had more classical monocytes and had upregulation of genes associated with activated neutrophils and monocytes in their whole blood compared to healthy controls. With single cell RNAseq, we identifed which cells were trisomy 8 and disomy based on chromosome 8 gene expression and found that trisomy 8 monocytes had distinct transcriptional signatures and alteration of innate immune genes. Our findings suggest that patients with T8M are prone to a distinct autoinflammatory disease which we propose calling trisomy 8 associated autoinflammatory disease (TRIAD) and have complications due to dysregulation of cells arising from the myeloid lineage. This work was supported by the Intramural Research Program of NIAID, NHGRI, and NHLBI, NIH.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.214
Teacher spread0.208 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2023
Admission routes1
Has abstractyes

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