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Record W4386543825 · doi:10.1093/ofid/ofad467

Biological and Clinical Implications of the Vascular Endothelial Growth Factor Coreceptor Neuropilin-1 in Human Immunodeficiency Virus

2023· article· en· W4386543825 on OpenAlexaff
Samuel R Schnittman, Márton Kolossváry, Gabriele Beck‐Engeser, Kathleen V. Fitch, Gabrielle C. Ambayec, Robin M. Nance, Markella V. Zanni, Marissa R Diggs, Fay Chan, Sara McCallum, Mabel Toribio, Laura Bamford, Carl J. Fichtenbaum, Joseph J. Eron, Jeffrey M. Jacobson, Kenneth H. Mayer, Carlos Malvestutto, Gerald S. Bloomfield, Richard D. Moore, Triin Umbleja, Michael S. Saag, Judith A. Aberg, Judith S. Currier, Joseph A. Delaney, Jeffrey N. Martin, Michael T. Lu, Pamela S. Douglas, Heather J. Ribaudo, Heidi M. Crane, Peter W. Hunt, Steven Grinspoon

Bibliographic record

VenueOpen Forum Infectious Diseases · 2023
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicAngiogenesis and VEGF in Cancer
Canadian institutionsUniversity of Manitoba
FundersNational Institute of Allergy and Infectious DiseasesNational Institute on AgingMacroGenicsAgency for Healthcare Research and QualityKowa CompanyRegeneron PharmaceuticalsGilead SciencesNational Institute of Diabetes and Digestive and Kidney DiseasesAmgenViiV HealthcareGlaxoSmithKlineNational Heart, Lung, and Blood InstitutePfizerNational Institute on Drug AbuseEli Lilly and CompanyNational Center for Advancing Translational SciencesACT GovernmentAmerican Heart AssociationNational Institutes of HealthU.S. Department of Health and Human Services
KeywordsMedicineNeuropilin 1AngiogenesisVascular endothelial growth factorMyocardial infarctionClinical trialGrowth factorImmunologyStroke (engine)Internal medicineBioinformaticsOncologyVEGF receptorsReceptorBiology

Abstract

fetched live from OpenAlex

Abstract Plasma vascular endothelial growth factor (VEGF) coreceptor neuropilin-1 (NRP-1) had the largest association with coronary plaque in the Randomized Trial to Prevent Vascular Events in HIV (REPRIEVE) proteomics analysis. With little known about NRP-1 in people with human immunodeficiency virus (PWH), we explored its relation to other proteins in REPRIEVE and validated our findings through a Centers for AIDS Research Network of Integrated Clinical Systems (CNICS) case-cohort study by assessing its relation to host factors and incident cardiovascular disease and cancer. Within REPRIEVE, NRP-1 was associated with proteins involved in angiogenesis, signal transduction, immunoregulation, and cell migration/adhesion. Within CNICS, NRP-1 was associated with key host factors, including older age and male sex. NRP-1 was associated with an increased hazard of multiple cancers but a decreased prostate cancer risk. Finally, NRP-1 was most strongly associated with mortality and type 2 myocardial infarction. These data suggest that NRP-1 is part of a clinically relevant immunoregulatory pathway related to multiple comorbidities in PWH. Clinical Trials Registration. NCT02344290.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.078
Threshold uncertainty score0.303

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.030
GPT teacher head0.330
Teacher spread0.300 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2023
Admission routes1
Has abstractyes

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