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Record W4386944842 · doi:10.3201/eid2910.230548

Influenza A(H5N1) Virus Infections in 2 Free-Ranging Black Bears (<i>Ursus americanus</i>), Quebec, Canada

2023· article· en· W4386944842 on OpenAlexafffundabout
Benjamin T. Jakobek, Yohannes Berhane, M. Nadeau, Carissa Embury‐Hyatt, Oliver Lung, Wanhong Xu, Stéphane Lair

Bibliographic record

VenueEmerging infectious diseases · 2023
Typearticle
Languageen
FieldMedicine
TopicInfluenza Virus Research Studies
Canadian institutionsUniversité de MontréalUniversity of SaskatchewanCanadian Food Inspection Agency
FundersParks CanadaOxford Nanopore Technologies
KeywordsInfluenza A virus subtype H5N1UrsusVirologyBiologyCladeVirusInfluenza A virusZoologyGenePhylogeneticsGeneticsMedicinePopulation

Abstract

fetched live from OpenAlex

S ince its arrival in North America during De- cember 2021, the Eurasian highly pathogenic avian influenza (HPAI) virus subtype H5N1, clade 2.3.4.4b, has been associated with a high mortality rate for wild birds all over the continent (1).Affected bird species include mainly waterfowl and colonial nesting marine birds, as well as scavenger birds, such as gulls, eagles, vultures, and corvids (2,3).As with several other subtypes, HPAI H5N1 can potentially infect persons, although clinical cases in humans have been limited (4).However, this virus has been shown to be pathogenic for different species of wild mammals, including red fox, striped skunk, mink, raccoon, and seals (5-7).Infections with influenza A(H1N1) viruses have been described in captive sloth bears (8).We report and describe infections by HPAI H5N1 virus in 2 black bears (Ursus americanus) found in Quebec, Canada, during the summer of 2022. The StudyTwo young-of-the-year black bear cubs (likely born in January-February) were observed wandering on a road within the Forillon National Park in Gaspé, Quebec, Canada (48°51′39′′N, 64°13′26′′W), on June 14, 2022.The cubs, which were active and quite vocal, were not attended by their dam.Shortly afterward, an adult female bear with unusual behavior was reported ≈200 m from the cubs.This female was wandering between vehicles, fell into a river, and began circling.Upon the arrival of park officials, the animal was in lateral recumbency and convulsing in a ditch.Because of the severity of the neurologic signs present and concern for public safety, the bear was anesthetized and then euthanized.The 2 cubs, presumed to be orphaned, were also euthanized.The carcasses of the adult female and 1 of the cubs were subsequently frozen.The adult female was thawed a few days later and examined on site.Different organs were sampled, refrozen and shipped, along with the originally frozen cub, to the Canadian Wildlife Health Cooperative Quebec regional center for further macroscopic examination, which was performed on July 7, 2022.Macroscopic examination of viscera of the adult female show no notable findings, other than extensive postmortem changes.The cub (a 5.1-kg female) was thin and had limited fat stores.A mild mesenteric lymphadenomegaly was present, and the cerebrum appeared to be diffusely congested.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.041
Threshold uncertainty score0.095

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0030.001
Scholarly communication0.0010.000
Open science0.0010.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.025
GPT teacher head0.326
Teacher spread0.300 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations39
Published2023
Admission routes3
Has abstractyes

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