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Record W4387536490 · doi:10.1101/2023.10.10.561651

How to define, use, and interpret Pagel’s λ (lambda) in ecology and evolution

2023· preprint· en· W4387536490 on OpenAlexaff
William D. Pearse, T. Jonathan Davies, E. M. Wolkovich

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2023
Typepreprint
Languageen
FieldEarth and Planetary Sciences
TopicEvolution and Paleontology Studies
Canadian institutionsUniversity of British Columbia
Fundersnot available
KeywordsPhylogenetic treeTraitImputation (statistics)Context (archaeology)EcologyMeasure (data warehouse)Evolutionary biologyMissing dataStatisticsBiologyMathematicsComputer scienceData mining

Abstract

fetched live from OpenAlex

1 Abstract Pagel’s λ (lambda) is a critical tool in ecology and evolution for describing trait evolution, imputing missing species’ data, and generalising ecological relationships beyond their study system. Yet the interpretation of λ depends on context, and there are many misconceptions about metrics that are similar but not identical to λ. As an index of phylogenetic signal applied to continuous traits, λ typically (but not always) ranges between 0 and 1, and is a rate-independent measure of the degree to which closely-related species resemble one-another relative to a Brownian motion expectation. But this measure is biased by non-random species sampling—a common characteristic of ecological data—which also makes phylogenetic imputation of missing traits challenging. The λ estimated in regression models has little to do with the phylogenetic signal of measured traits and is better considered as either a statistical correction or a measure of the impact of unmeasured (latent) traits in the model. In other contexts, such as hierarchical models including intra-specific variation, λ is frequently confused with distinct metrics such as h 2 . We show how confusion in defining and using λ can mislead our interpretation of ecological and evolutionary processes. Open research statement No data were used or collected as part of this work.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.034
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.025
GPT teacher head0.210
Teacher spread0.185 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations14
Published2023
Admission routes1
Has abstractyes

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