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Record W4388103742 · doi:10.1101/2023.10.26.563793

A mathematical model of the Alzheimer’s Disease biomarker cascade demonstrates statistical pitfalls in identifying neurobiological surrogates of cognitive reserve

2023· preprint· en· W4388103742 on OpenAlexfundno aff
Florian U. Fischer, Susanne Gerber, Oliver Tüscher

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2023
Typepreprint
Languageen
FieldMedicine
TopicAlzheimer's disease research and treatments
Canadian institutionsnot available
FundersCanadian Institutes of Health ResearchUniversitätsmedizin der Johannes Gutenberg-Universität MainzNational Institutes of HealthGenentechIXICOH. Lundbeck A/SServierEisaiNorthern California Institute for Research and EducationF. Hoffmann-La RocheUniversity of Southern CaliforniaBiogenEli Lilly and CompanyBristol-Myers SquibbBioClinicaU.S. Department of DefenseMeso Scale DiagnosticsAlzheimer's Disease Neuroimaging InitiativeNovartis Pharmaceuticals CorporationPfizerAlzheimer's Association
KeywordsCognitive reserveCognitionAlzheimer's diseaseHippocampal formationSample size determinationBiomarkerNeurosciencePsychologyConfoundingAlzheimer's Disease Neuroimaging InitiativeNeurodegenerationSample (material)StatisticsDiseaseInternal medicineCognitive impairmentMedicineBiologyMathematicsChemistry

Abstract

fetched live from OpenAlex

Abstract Introduction In order to investigate neurobiological surrogates of cognitive reserve, statistical interaction analyses have been put forward and used by several studies. However, as these neurobiological surrogates are potentially affected by neurodegeneration as part of the amyloid cascade, which is characterized by chronological time-moderated associations between biomarkers, cross sectional sampling in combination with the disregard of time as a confounder could introduce interaction effects that may be misinterpretabed as cognitive reserve in statistical analyses. Methods We modeled the amyloid cascade with a minimal set of three biomarkers amyloid load, corticospinal fluid tau, hippocampal volume and cognitive outcome using a differential equation system, whose parameters were estimated from empirical data from the ADNI. Interaction effects between pathology markers amyloid and tau with hippocampal volume as potential marker of cognitive reserve were estimated on two simulated data samples. Both samples were calculated from varying amyloid, tau and hippocampal volume for the initial configuration of individual trajectories. For Sample 1, data points were sampled at a fixed time after baseline. For Sample 2, data points were sampled at random time points. Results Regression analyses on Sample 1 yielded estimates for interaction effects of 0. For Sample 2, estimates were -.1692 and -.0807 for amyloid and tau with hippocampal volume, respectively. The interaction effect estimates for Sample 2 decreased several orders of magnitude when taking into account the timepoint of sampling. Conclusion Studies aiming to investigate neurobiological surrogates of cognitive reserve that are affected by Alzheimer’s Disease-related neurodegenerative processes need to consider inter-individually varying sampling time points in the data to avoid misinterpreting interaction effects.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.005
metaresearch head score (Gemma)0.012
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: Methods · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.995
Threshold uncertainty score0.027

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0050.012
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.103
GPT teacher head0.331
Teacher spread0.228 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designSimulation or modeling
DomainMethods
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2023
Admission routes1
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)→Same topicAlzheimer's disease research and treatments→French-language works237,207→