MétaCan
Menu
Back to cohort
Record W4388824157 · doi:10.1038/s41588-023-01563-z

Multi-ancestry genome-wide association study of cannabis use disorder yields insight into disease biology and public health implications

2023· article· en· W4388824157 on OpenAlexaff
Daniel F. Levey, Marco Galimberti, Joseph D. Deak, Frank R. Wendt, Arjun Bhattacharya, Dóra Koller, Kelly Harrington, Rachel Quaden, Emma C. Johnson, Priya Gupta, Mahantesh I. Biradar, Max Lam, Megan E. Cooke, Veera M. Rajagopal, Stefany Lucas Lopes Empke, Hang Zhou, Yaira Z. Nuñez, Henry R. Kranzler, Howard J. Edenberg, Arpana Agrawal, Jordan W. Smoller, Todd Lencz, David M. Hougaard, Anders D. Børglum, Ditte Demontis, J. Michael Gaziano, Michael J. Gandal, Renato Polimanti, Murray B. Stein, Joel Gelernter

Bibliographic record

VenueNature Genetics · 2023
Typearticle
Languageen
FieldMedicine
TopicCannabis and Cannabinoid Research
Canadian institutionsPublic Health OntarioUniversity of Toronto
FundersNational Center for Advancing Translational SciencesNational Institute of Mental HealthNational Center for PTSD, U.S. Department of Veterans AffairsNational Institutes of HealthFoundation for the National Institutes of HealthNovo Nordisk FondenLundbeckfondenAarhus UniversitetEuropean CommissionNational Institute on Alcohol Abuse and AlcoholismOne MindNational Institute on Deafness and Other Communication DisordersNational Institute on Drug AbuseNational Alliance for Research on Schizophrenia and DepressionNovo NordiskVISN 4 Mental Illness Research, Education, and Clinical CenterOffice of Research and DevelopmentNIH Clinical CenterH. Lundbeck A/SU.S. Department of Veterans AffairsBrain and Behavior Research Foundation
KeywordsBiologyGenome-wide association studyDiseaseCannabisGeneticsGenetic associationGenomePublic healthAssociation (psychology)Computational biologyEvolutionary biologyGenotypeSingle-nucleotide polymorphismGenePsychiatry

Abstract

fetched live from OpenAlex

Abstract As recreational use of cannabis is being decriminalized in many places and medical use widely sanctioned, there are growing concerns about increases in cannabis use disorder (CanUD), which is associated with numerous medical comorbidities. Here we performed a genome-wide association study of CanUD in the Million Veteran Program (MVP), followed by meta-analysis in 1,054,365 individuals ( n cases = 64,314) from four broad ancestries designated by the reference panel used for assignment (European n = 886,025, African n = 123,208, admixed American n = 38,289 and East Asian n = 6,843). Population-specific methods were applied to calculate single nucleotide polymorphism-based heritability within each ancestry. Statistically significant single nucleotide polymorphism-based heritability for CanUD was observed in all but the smallest population (East Asian). We discovered genome-wide significant loci unique to each ancestry: 22 in European, 2 each in African and East Asian, and 1 in admixed American ancestries. A genetically informed causal relationship analysis indicated a possible effect of genetic liability for CanUD on lung cancer risk, suggesting potential unanticipated future medical and psychiatric public health consequences that require further study to disentangle from other known risk factors such as cigarette smoking.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.097
Threshold uncertainty score0.484

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.042
GPT teacher head0.369
Teacher spread0.328 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations116
Published2023
Admission routes1
Has abstractyes

Explore more

Same venueNature GeneticsSame topicCannabis and Cannabinoid ResearchFrench-language works237,207