MétaCan
Menu
Back to cohort
Record W4399133791 · doi:10.21037/map-24-ab073

AB073. SOH24AB_228. Immunomodulatory effect of epigenetic modification on T cell phenotype and checkpoint receptor expression in oesophageal adenocarcinoma

2024· article· en· W4399133791 on OpenAlexaff
Brendan Moran, Andrew Sheppard, Aoife Kilgallon, Matthew G. Davey, John V. Reynolds, Joanne Lysaght, Noel E. Donlon

Bibliographic record

VenueMesentery and Peritoneum · 2024
Typearticle
Languageen
FieldMedicine
TopicCancer Immunotherapy and Biomarkers
Canadian institutionsTrinity College
Fundersnot available
KeywordsEpigeneticsPhenotypeCancer researchBiologyGeneticsGene

Abstract

fetched live from OpenAlex

Background: Histone deacetylase inhibitors (HDACi) are immunotherapy agents demonstrating efficacy in malignancies such as T-cell lymphoma and Multiple Myeloma. This study aims to characterise the effects of HDACi on T-cell phenotype and function, both in health and in oesophageal adenocarcinoma (OAC), and identify opportunities for synergism with immune checkpoint inhibitors (ICIs). Methods: Through ex-vivo models, activated T-cells isolated from healthy donors and OAC patients, were treated with four HDACi (panobinostat, romidepsin, tubacin & PCI-34051). T-cell activation, immune checkpoint receptor expression and cytokine production were assessed by flow cytometry, under normal conditions and those of the microenvironment (glucose deprivation, glutamine deprivation and hypoxia). Results: HDACi did not affect activation of T-cells. Under normal conditions in both healthy and OAC T-cells, reductions in PD-1, LAG-3 and TIGIT were noted for all HDACi. Romidepsin significantly reduced TIGIT expression on helper CD4+ T-cells in OAC samples (P<0.01). Tumour microenvironment conditions further enhanced these effects, notably hypoxia. Significant reductions in PD-1, LAG-3 and TIGIT were noted in deprivation states in T-cells treated with panobinostat (P<0.05), romidepsin (P<0.05) and tubacin (P<0.05), while PCI-34051 displayed significant reductions of LAG-3 only (P<0.05). OAC samples demonstrated significantly reduced PD-1 expression at baseline on helper CD4+ T-cells, and significant increases in LAG-3 and TIGIT expression on cytotoxic CD8+ T-cells compared to healthy donors (P<0.05). Conclusions: OAC donor T-cells displayed significant differences in checkpoint expression compared to healthy donors. PCI-34051 maintained checkpoint expression in both healthy and OAC T-cells which could be crucial to understanding the potential of combinational therapeutic strategies with ICIs and epidrugs.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.237
Threshold uncertainty score0.498

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.266
Teacher spread0.255 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

Explore more

Same venueMesentery and PeritoneumSame topicCancer Immunotherapy and BiomarkersFrench-language works237,207