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Record W4405999050 · doi:10.1101/2024.12.18.628357

A Locus Control Region Generates Distinct Active Placental Lactogen And Inactive Growth Hormone Gene Domains In Term Placenta That Are Disrupted With Obesity

2024· preprint· en· W4405999050 on OpenAlexaff
Yan Jin, Ian McNicol, Peter A. Cattini

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2024
Typepreprint
Languageen
FieldMedicine
TopicBirth, Development, and Health
Canadian institutionsUniversity of Manitoba
Fundersnot available
KeywordsPlacental lactogenPlacentaEndocrinologyLocus (genetics)Internal medicineBiologyHormoneGeneGrowth hormoneGeneticsMedicinePregnancyFetus

Abstract

fetched live from OpenAlex

Abstract A Placental villi include an outer layer of syncytiotrophoblasts (STBs) and an inner layer of cytotrophoblasts (CTBs) that fuse to generate STBs in pregnancy. While activation of the single locus containing the human (h) placental lactogen (hPL) genes ( hPL-A / CSH1 and hPL-B / CSH2 ) begins in the CTBs, their expression in STBs requires further epigenetic modifications as well as interactions between locus control region (LCR) and gene regulatory sequences. No transcription factor that limits or facilitates hPL LCR/gene interactions for locus activation is reported but the paternally-expressed gene 3 (PEG3/PW1) transcription factor is a candidate. PEG3 is expressed by villous CTBs but not STBs, and putative PEG3 sites were identified in the hPL LCR and promoter sequences. Furthermore, dysregulation of both hPL and PEG3 gene expression have been linked to peripartum depression. Using CTB-like JEG-3 cells, we show PEG3 binding to hypersensitive sites (HS III-V) within the LCR, and that hPL transcript levels increase with PEG-3 knockdown. In term placenta, PEG3 binding at placenta-specific HS IV was increased with maternal obesity, where a decrease in hPL RNA levels is seen, while PEG3 binding was reduced in women with obesity who develop insulin-treated gestational diabetes mellitus (O/GDM+Ins), where increased hPL gene expression is observed. Chromatin conformation capture revealed distinct hPL gene domain interactions that are modified with maternal obesity but largely reversed in O/GDM+Ins, correlating with PEG3 binding. Thus, decreased PEG3 binding may be required for hPL domain generation and expression during CTB to STB transition.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.009

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0030.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.229
Teacher spread0.215 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)→Same topicBirth, Development, and Health→French-language works237,207→