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Record W4406379979 · doi:10.1002/ppp.2264

Microbial Ecology of Permafrost Soils: Populations, Processes, and Perspectives

2025· article· en· W4406379979 on OpenAlexaff
Mark P. Waldrop, Jessica G. Ernakovich, Tatiana A. Vishnivetskaya, Sean Robert Schaefer, Rachel Mackelprang, Jiří Bárta, Joy M. O’Brien, Matthias Winkel, Robyn A. Barbato, Liam Heffernan, Mary‐Cathrine Leewis, Rebecca E. Hewitt, Jenni Hultman, Yanchen Sun, Christina Biasi, James A. Bradley, Susanne Liebner, Michael P. Ricketts, Mario E. Muscarella, Ursel M. E. Schütte, Fumnanya Abuah, Emily D. Whalen, Ina Timling, Carolina Voigt, Neslihan Taş, Karen G. Lloyd, Henri Siljanen, Elizaveta Rivkina, Jana Voříšková, Jing Tao, Renxing Liang, Zhen Li, Jay T. Lennon, T. C. Onstott

Bibliographic record

VenuePermafrost and Periglacial Processes · 2025
Typearticle
Languageen
FieldEarth and Planetary Sciences
TopicClimate change and permafrost
Canadian institutionsAgriculture and Agri-Food Canada
FundersBiological and Environmental ResearchU.S. Geological SurveyNuclear Safety and Security CommissionArmy Research OfficeBundesministerium für Bildung und ForschungGrantová Agentura České RepublikyOffice of ScienceAustrian Science FundNational Aeronautics and Space AdministrationU.S. Department of EnergyNational Science Foundation
KeywordsPermafrostBiogeochemistryEarth scienceEnvironmental scienceEcologyEcosystemClimate changeSoil waterMicrobial ecologyGreenhouse gasPhysical geographyGeologySoil scienceGeographyBiologyPaleontology

Abstract

fetched live from OpenAlex

ABSTRACT Permafrost microbial research has flourished in the past decades, due in part to improvements in sampling and molecular techniques, but also the increased focus on the permafrost greenhouse gas feedback to climate change and other ecological processes in high latitude and alpine permafrost soils. Permafrost microorganisms are adapted to these extreme environments and remain active at low temperatures and when resources are limited. They are also an important component of global elemental cycles as they regulate organic matter turnover and greenhouse gas production, particularly as permafrost thaws. Here we review the permafrost microbiology literature coupled with an exploration of its historical aspects, with a particular focus on a new understanding advanced by molecular biology techniques. We further identify knowledge gaps and ways forward to improve our understanding of microbial contributions to ecosystem biogeochemistry of permafrost‐affected systems.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.002
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0000.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.034
GPT teacher head0.266
Teacher spread0.232 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations10
Published2025
Admission routes1
Has abstractyes

Explore more

Same venuePermafrost and Periglacial ProcessesSame topicClimate change and permafrostFrench-language works237,207