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Record W4406934579 · doi:10.1098/rspb.2024.1487

The promise of community-driven preprints in ecology and evolution

2025· article· en· W4406934579 on OpenAlexafffund
Daniel W. A. Noble, Zoe A. Xirocostas, Nicholas C. Wu, April Robin Martinig, Rafaela A. Almeida, Kevin R. Bairos‐Novak, Heikel Balti, Michael G. Bertram, Louis Bliard, Jack A. Brand, Ilha Byrne, Ying‐Chi Chan, Dena J. Clink, Quentin Corbel, Ricardo A. Correia, Jordann Crawford‐Ash, Antica Čulina, Elvira D’Bastiani, Gideon Gywa Deme, Melina de Souza Leite, Félicie Dhellemmes, Shreya Dimri, Szymon M. Drobniak, Alexander Elsy, Susan E. Everingham, Samuel J. L. Gascoigne, Matthew Grainger, Gavin C. Hossack, Knut Anders Hovstad, Edward R. Ivimey‐Cook, Matt Lloyd Jones, Ineta Kačergytė, Georg Küstner, Dalton C. Leibold, Magdalena M. Mair, Jake M. Martin, Ayumi Mizuno, Iain R. Moodie, David Moreau, Rose E. O’Dea, James Orr, Matthieu Paquet, Rabindra Parajuli, Joel L. Pick, Patrice Pottier, Marija Purgar, Pablo Recio, Dominique G. Roche, Raphaël Royauté, Saeed Shafiei Sabet, Júlio M.G. Segovia, Inês Silva, Alfredo Sánchez‐Tójar, Bruno Eleres Soares, Birgit Szabo, Elina Takola, Eli S.J. Thoré, Bishnu Timilsina, Natalie E. van Dis, Wilco C. E. P. Verberk, Stefan J. G. Vriend, Kristoffer H. Wild, Coralie Williams, Yefeng Yang, Shinichi Nakagawa, Malgorzata Lagisz

Bibliographic record

VenueProceedings of the Royal Society B Biological Sciences · 2025
Typearticle
Languageen
FieldDecision Sciences
TopicAcademic Publishing and Open Access
Canadian institutionsUniversity of AlbertaUniversity of ReginaCarleton UniversityUniversity of British Columbia
FundersAustralian Research CouncilNatural Sciences and Engineering Research Council of Canada
KeywordsPreprintPublishingUploadEcologySociologyBiologyWorld Wide WebComputer sciencePolitical science

Abstract

fetched live from OpenAlex

Publishing preprints is quickly becoming commonplace in ecology and evolutionary biology. Preprints can facilitate the rapid sharing of scientific knowledge establishing precedence and enabling feedback from the research community before peer review. Yet, significant barriers to preprint use exist, including language barriers, a lack of understanding about the benefits of preprints and a lack of diversity in the types of research outputs accepted (e.g. reports). Community-driven preprint initiatives can allow a research community to come together to break down these barriers to improve equity and coverage of global knowledge. Here, we explore the first preprints uploaded to EcoEvoRxiv ( n = 1216), a community-driven preprint server for ecologists and evolutionary biologists, to characterize preprint use in ecology, evolution and conservation. Our perspective piece highlights some of the unique initiatives that EcoEvoRxiv has taken to break down barriers to scientific publishing by exploring the composition of articles, how gender and career stage influence preprint use, whether preprints are associated with greater open science practices (e.g. code and data sharing) and tracking preprint publication outcomes. Our analysis identifies areas that we still need to improve upon but highlights how community-driven initiatives, such as EcoEvoRxiv , can play a crucial role in shaping publishing practices in biology.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.014
metaresearch head score (Gemma)0.012
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch, Science and technology studies
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.121
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0140.012
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0010.003
Scholarly communication0.0000.000
Open science0.0040.002
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.078
GPT teacher head0.374
Teacher spread0.295 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2025
Admission routes2
Has abstractyes

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