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Record W4409829861 · doi:10.1093/icesjms/fsaf017

Pathways for converting zooplankton traits to ecological insights are paved with findable, accessible, interoperable, and reusable (FAIR) data practices

2025· article· en· W4409829861 on OpenAlexafffund
Jessica Titocci, Patrick R. Pata, Tiziana Durazzano, Sakina‐Dorothée Ayata, Corentin Clerc, Astrid Cornils, Patrick I. Duffy, Adam T. Greer, Claudia Halsband, Ryan Heneghan, Anaïs Lacoursière‐Roussel, Fabien Lombard, Sanna Majaneva, Evgeny A. Pakhomov, Carolina Reis, Sinja Rist, Alix C M Rommel, Teresa Silva, Lars Stemmann, Kevin Ugwu, Alberto Basset, Ilaria Rosati, Kieran Murphy, Brian P. V. Hunt

Bibliographic record

VenueICES Journal of Marine Science · 2025
Typearticle
Languageen
FieldEnvironmental Science
TopicEnvironmental DNA in Biodiversity Studies
Canadian institutionsFisheries and Oceans CanadaUniversity of British Columbia
FundersCanadian Space AgencyNorth Pacific Marine Science OrganizationNatural Sciences and Engineering Research Council of CanadaHorizon 2020Coordenação de Aperfeiçoamento de Pessoal de Nível SuperiorMarine Environmental Observation Prediction and Response Network
KeywordsInteroperabilityZooplanktonEcologyComputer scienceBiologyWorld Wide Web

Abstract

fetched live from OpenAlex

Abstract The use of trait-based approaches and trait data in zooplankton ecology is rapidly growing to better understand and predict the patterns of zooplankton distributions and their role in aquatic ecosystems and biogeochemical cycles. Although the number of zooplankton trait-based studies and available trait datasets is increasing, several challenges remain for the findability, accessibility, interoperability, and reusability (FAIR) in trait-based approaches that, if unaddressed, may stifle progress in this research area. Here, we review recent applications of trait-based approaches in zooplankton research and summarize the currently available trait data resources. To realize the potential of trait-based approaches to resolve ecological roles of zooplankton, datasets and approaches must adhere to FAIR principles. We provide recommendations and pathways forward to ensure FAIRness while highlighting the importance of collaborative efforts. These practical and easily implementable strategies will enhance the FAIRness of trait data, ultimately advancing zooplankton ecological research and connecting these findings to aquatic ecosystem functioning.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.200
metaresearch head score (Gemma)0.295
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch, Open science
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: Theoretical or conceptual
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.994
Threshold uncertainty score0.986

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.2000.295
Meta-epidemiology (narrow)0.0020.002
Meta-epidemiology (broad)0.0020.004
Bibliometrics0.0120.010
Science and technology studies0.0030.010
Scholarly communication0.0230.041
Open science0.0060.023
Research integrity0.0040.010
Insufficient payload (model declined to judge)0.0080.004

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.045
GPT teacher head0.285
Teacher spread0.240 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designTheoretical or conceptual
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations7
Published2025
Admission routes2
Has abstractyes

Explore more

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