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Record W4411022428 · doi:10.1093/jambio/lxaf140

Low water activity limits bentonite-associated microbial growth

2025· article· en· W4411022428 on OpenAlexafffund
Rhiannon Punch, Lucas Beckering Vinckers Stofer, C.M. James Neurauter, Rachel C. Beaver, Katja Engel, S. Stroes-Gascoyne, Chang Seok Kim, W. Jeffrey Binns, Myrna J. Simpson, G. F. Slater, Josh D. Neufeld

Bibliographic record

VenueJournal of Applied Microbiology · 2025
Typearticle
Languageen
FieldEngineering
TopicSoil and Unsaturated Flow
Canadian institutionsNuclear Waste Management OrganizationCanmore Museum and Geoscience CentreUniversity of TorontoMcMaster UniversityUniversity of Waterloo
FundersNatural Sciences and Engineering Research Council of CanadaUniversity of WaterlooNuclear Waste Management Organization
KeywordsMicrocosmAnoxic watersBentoniteMicroorganismEnvironmental chemistryMicrobial population biologyAbundance (ecology)Relative species abundanceSaturation (graph theory)ChemistryBiologyEnvironmental scienceEcologyBacteria

Abstract

fetched live from OpenAlex

AIMS: This research investigated the impact of water activity on microbial abundance estimates from bentonite under conditions relevant to a deep geological repository for used nuclear fuel. Because previous research tested saturation of bentonite within pressurized vessels, the goal of this study was to assess how water activity alone, without pressure, prevents increases in microbial abundance estimates from bentonite samples. METHODS AND RESULTS: Small-scale microcosms of bentonite were hydrated to low, medium, or high water activities, with Type I water, reference groundwater, or bacterial growth medium, then incubated under oxic or anoxic conditions. At six timepoints over a 6-month period, microorganisms were quantified using cultivation-dependent and independent approaches, and 16S rRNA genes were sequenced to monitor relative abundance changes of microbial taxa. Large-scale incubations were then conducted to also enable analyses of phospholipid fatty acids and natural organic matter. The results demonstrate that increasing water activity was associated with higher microbial abundance estimates for oxic condition incubations, with water-activity-dependent actinobacterial growth. In contrast, no significant microbial abundance changes were observed for anoxic microcosm incubations. For all tested conditions, we did not detect any increases in sulfate-reducing bacteria abundance estimates. CONCLUSIONS: Although low water activity conditions prevented changes in microbial abundances for bentonite samples incubated under oxic conditions, anoxic conditions alone prevented increases in abundances of culturable microorganisms. These results complement previous pressure-vessel studies that have shown how low water activity and elevated pressure simultaneously reduce the abundance of viable microorganisms that can initially proliferate during the saturation process.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.589

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.004
GPT teacher head0.185
Teacher spread0.181 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2025
Admission routes2
Has abstractyes

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