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Record W4411299228 · doi:10.1099/jgv.0.002077

Annual (2024) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense RNA viruses (realm Riboviria: kingdom Orthornavirae: phylum Negarnaviricota)

2025· article· en· W4411299228 on OpenAlexaff
Jens H. Kuhn, Scott Adkins, Sergey V. Alkhovsky Альховский Сергей Владимирович, Wenxia An 安雯霞, Tatjana Avšič‐Županc, Marı́a A. Ayllón, Katarina Bačnik, Justin Bahl, Anne Balkema‐Buschmann, Matthew J. Ballinger, Martin Beer, Nicolás Bejerman, Éric Bergeron, Nadine Biedenkopf, Carol D. Blair, Kim R. Blasdell, Steven B. Bradfute, Thomas Briese, Katherine A. Brown, Ursula J. Buchholz, Michael J. Buchmeier, Alexander Bukreyev, Felicity J. Burt, Charles H. Calisher, Sten Calvelage, Mengji Cao, Inmaculada Casas, Kartik Chandran, Rémi N. Charrel, Anya Crane, Laura N. Cuypers, Elena Dal Bó, Juan Carlos de la Torre, William Marciel de Souza, Rik L. de Swart, Humberto Debat, Nolwenn M. Dheilly, Nicholas Di Paola, Francesco Di Serio, Ralf G. Dietzgen, M. Digiaro, Jan Felix Drexler, W. Paul Duprex, Ralf Dürrwald, Andrew J. Easton, Toufic Elbeaino, Koray Ergünay, Mirette I. Y. Eshak, Guozhong Feng 冯国忠, Andrew E. Firth, Anthony R. Fooks, Pierre Formenty, Juliana Freitas‐Astúa, Conrad M. Freuling, Tuija Gadd, Selma Gago‐Zachert, María Laura García, Adolfo García‐Sastre, Aura R. Garrison, Tony L. Goldberg, Jean‐Paul Gonzalez, Joë̈lle Goü̈y de Bellocq, Anthony Griffiths, Martin H. Groschup, Sophie Gryseels, Ion Gutiérrez‐Aguirre, Stephan Günther, John Hammond, Jussi Hepojoki, Masayuki Horie, Adam J. Hume, Timothy H. Hyndman, Dirk W. Höper, Dàohóng Jiāng, Sandra Junglen, Boris Klempa, Jonas Klingström, Hideki Kondō, Eugene V. Koonin, Mart Krupovìč, Kenji Kubota, Gael Kurath, Denis Kutnjak, Lies Laenen, Amy J. Lambert, Benhur Lee, Chengyu Li 李呈宇, Jiànróng Lǐ, Jun‐Min Li, Igor S. Lukashevich, Piet Maes, Marco Marklewitz, Sergio H. Marshall, Shin-Yi Lee Marzano, John W. McCauley, Nataša Mehle, Alì Mirazimi, Toshiyuki Morikawa 守川俊幸, Elke Mühlberger, T. Müller, R. A. Naidu, Tomohide Natsuaki, Beatriz Navarro, Yutaro Neriya, Netesov Sv, Vittorio Nicoloso, Gabriele Neumann, Tiina Nokireki, Norbert Nowotny, Márcio Roberto Teixeira Nunes, Francisco M. Ochoa‐Corona, Gustavo Palacios, Vicente Pallás, Anna Papa, Sofia Paraskevopoulou, Colin R. Parrish, Alex Pauvolid‐Corrêa, Anja Pecman, Daniel R. Pérez, Florian Pfaff, Richard K. Plemper, Thomas S. Postler, Sheli R. Radoshitzky, Pedro Luis Ramos‐González, Maja Ravnikar, Renato O. Resende, Gábor Reuter, Carina A. Reyes, Mark Paul Selda Rivarez, Vı́ctor Romanowski, Dennis Rubbenstroth, Luisa Rubino, Jonathan A. Runstadler, Ana Ruiz-Padilla, Sead Sabanadzovic, María S. Salvato, Takahide Sasaya, Connie S. Schmaljohn, Heike Schmidt‐Posthaus, Martin Schwemmle, Gabrijel Seljak, Torsten Seuberlich, Mǎng Shī, Yoshifumi Shimomoto, Peter Simmonds, Manuela Sironi, Donald B. Smith, Sophie J. Smither, Jin‐Won Song, Kirsten Spann, Jessica R. Spengler, Mark D. Stenglein, Ayato Takada, Chika Takemura, Niina Tammiranta, Robert B. Tesh, Natalie J. Thornburg, Nicole D. Tischler, Yasuhiro Tomitaka, Keizō Tomonaga, Noël Tordo, Massimo Turina, Ioannis E. Tzanetakis, Bernadette van den Hoogen, Bert Vanmechelen, Nikos Vasilakis, M. Verbeek, Susanne von Bargen, Ana Vučurović, Jiro Wada, Victoria Wahl‐Jensen, Peter J. Walker, Fei Wang, Anna E. Whitfield, John V. Williams, Yuri I. Wolf, Hironobu Yanagisawa, Caixia Yang 杨彩霞, Gōngyín Yè, Meng Yu, F. Murilo Zerbini, Arnfinn Lodden Økland, Holly R. Hughes

Bibliographic record

VenueJournal of General Virology · 2025
Typearticle
Languageen
FieldMedicine
TopicViral Infections and Vectors
Canadian institutionsUniversity of British Columbia
FundersNational Institute of Allergy and Infectious DiseasesScience and Technology DirectorateBattelleAgricultural Research ServiceU.S. Department of Health and Human ServicesNational Institutes of HealthNational Institute of Food and AgricultureMaine Agricultural and Forest Experiment StationU.S. Department of DefenseWorld Health OrganizationU.S. Department of Homeland SecurityAgencia Nacional de Investigación y DesarrolloU.S. Department of Agriculture
KeywordsPhylumBiologyTaxonomy (biology)RNATaxonVirus classificationEvolutionary biologyRNA polymerasePhylogeneticsGeneticsVirologyZoologyGenomeGeneEcology

Abstract

fetched live from OpenAlex

In April 2024, following the annual International Committee on Taxonomy of Viruses (ICTV) ratification vote on newly proposed taxa, the phylum Negarnaviricota was expanded by 1 new order, 1 new family, 6 new subfamilies, 34 new genera and 270 new species. One class, two orders and six species were renamed. Seven families and 12 genera were moved; ten species were renamed and moved; and nine species were abolished. This article presents the updated taxonomy of Negarnaviricota as currently accepted by the ICTV, providing an essential annual update on the classification of members of this phylum that deepen understandings of their evolution, and supports critical public health measures for virus identification and tracking.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.005
metaresearch head score (Gemma)0.005
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.007
Threshold uncertainty score0.024

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0050.005
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0030.002
Science and technology studies0.0010.001
Scholarly communication0.0020.002
Open science0.0010.002
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0040.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.024
GPT teacher head0.309
Teacher spread0.285 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations6
Published2025
Admission routes1
Has abstractyes

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