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Record W4412853873 · doi:10.1101/2025.07.30.663632

Community Challenge towards Consensus on Characterization of Biological Tissue: C <sup>4</sup> Bio’s First Findings

2025· preprint· en· W4412853873 on OpenAlexaff
Nele Famaey, Heleen Fehervary, Yoann Lafon, Ali Akyildiz, Silke Dreesen, Karine Bruyère-Garnier, Jean‐Marc Allain, Marta Alloisio, Alejandro Aparici-Gil, Chiara Catalano, Fanette Chassagne, Snehal Chokhandre, Kimberly Crevits, Hanneke Crielaard, Eoghan M. Cunnane, Connor V. Cunnane, Karen De Leener, Amisha Desai, Rob Driessen, Mona Eskandari, Sam Weiss Evans, Christian Gasser, Marc Gebhardt, Birgit Glasmacher, Gerhard A. Holzapfel, Mikel Isasi, Louise M. Jennings, Sascha Kurz, Sara Leal‐Marin, Pauline Lecomte‐Grosbras, Annie Morch, John J. Mulvihill, Fulufhelo Ṋemavhola, Thanyani Pandelani, Salvatore Pasta, Estefanía Peña, Baptiste Pierrat, Heidi‐Lynn Ploeg, Stanislav Polzer, Manuel K. Rausch, David Schwarz, Hazel R. C. Screen, Selda Sherifova, Gerhard Sommer, Shengzhang Wang, D. Walsh, Thierry Marchal, Liesbet Geris

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2025
Typepreprint
Languageen
FieldEngineering
TopicElasticity and Material Modeling
Canadian institutionsQueen's University
Fundersnot available
KeywordsCharacterization (materials science)BIOSComputational biologyComputer sciencePolitical scienceBiologyNanotechnologyMaterials scienceOperating system

Abstract

fetched live from OpenAlex

Abstract This study investigates methodological variability across various expert laboratories worldwide, with regards to characterizing the mechanical properties of biological tissues. Two testing rounds were conducted on the specific use case of uniaxial tensile testing of porcine aorta. In the first round, 24 labs were invited to apply their established methods to assess inter-laboratory variability. This revealed significant methodological diversity and associated variability in the stress-stretch results, underscoring the necessity for a standardized approach. In the second round, a consensus protocol was collaboratively developed and adopted by 19 labs in an attempt to minimize variability. This involved standardized sample preparation and uniformity in testing protocol, including the use of a common cutting and thickness measurement tool. Despite protocol harmonization, significant variability persisted across labs, which could not be solely attributed to inherent biological differences in tissue samples. These results illustrate the challenges in unifying testing methods across different research settings, underlining the necessity for further refinement of testing practices. Enhancing consistency in biomechanical experiments is pivotal when comparing results across studies, as well as when using the resulting material properties for in silico simulations in medical research.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.030
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.029
GPT teacher head0.225
Teacher spread0.196 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2025
Admission routes1
Has abstractyes

Explore more

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