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Record W4413385171 · doi:10.1016/j.cell.2025.07.041

Adenosine kinase and ADAL coordinate detoxification of modified adenosines to safeguard metabolism

2025· article· en· W4413385171 on OpenAlexfundno aff
Akiko Ogawa, Satoshi Watanabe, Iuliia Ozerova, Allen Yi‐Lun Tsai, Yoshihiko Kuchitsu, Harrison B. Chong, Tomoyoshi Kawakami, Jirio Fuse, Wei Han, Ryuhei Kudo, Tomoki Naito, Kota Sato, Toru Nakazawa, Yasunori Saheki, Akiyoshi Hirayama, Peter F. Stadler, Mieko Arisawa, Kimi Araki, Liron Bar‐Peled, Tomohiko Taguchi, Shinichiro Sawa, Kenji Inaba, Fan‐Yan Wei

Bibliographic record

VenueCell · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicAdenosine and Purinergic Signaling
Canadian institutionsnot available
FundersFusion Oriented REsearch for disruptive Science and TechnologyExploratory Research for Advanced TechnologyJapan Society for the Promotion of ScienceJapan Science and Technology AgencyDaiichi Sankyo Foundation of Life ScienceAstellas Foundation for Research on Metabolic DisordersInamori FoundationGout and Uric Acid FoundationMinistry of Education - SingaporeNational Research FoundationJapan Science and Technology CorporationNational Research Foundation SingaporeSumitomo FoundationMitsubishi FoundationTakeda Science FoundationJapan Society for the Promotion of Science LondonJapan Agency for Medical Research and DevelopmentUniversity of WaterlooNaito Foundation
KeywordsBiologyAdenosineDetoxification (alternative medicine)MetabolismBiochemistryCell biology

Abstract

fetched live from OpenAlex

RNA contains diverse post-transcriptional modifications, and its catabolic breakdown yields numerous modified nucleosides requiring correct processing, but the mechanisms remain unknown. Here, we demonstrate that three RNA-derived modified adenosines, N 6 -methyladenosine (m 6 A), N 6 , N 6 -dimethyladenosine (m 6,6 A), and N 6 -isopentenyladenosine (i 6 A), are sequentially metabolized into inosine monophosphate (IMP) to mitigate their intrinsic cytotoxicity. After phosphorylation by adenosine kinase (ADK), they undergo deamination by adenosine deaminase-like (ADAL). In Adal knockout mice, N 6 -modified adenosine monophosphates (AMPs) accumulate and allosterically inhibit AMP-activated protein kinase (AMPK), dysregulating glucose metabolism. Furthermore, ADK deficiency, linked to human inherited disorders of purine metabolism, elevates levels of the three modified adenosines, resulting in early lethality in mice. Mechanistically, excessive m 6 A, m 6,6 A, and i 6 A impair lysosomal function by interfering with lysosomal membrane proteins, thereby disrupting lipid metabolism and causing cellular toxicity. Through this nucleotide metabolism pathway and mechanism, cells detoxify modified adenosines, linking modified RNA metabolism to human disease.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.019
Threshold uncertainty score0.463

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.239
Teacher spread0.232 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations6
Published2025
Admission routes1
Has abstractyes

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