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Record W4414307828 · doi:10.1080/14786419.2025.2559778

Integrated biological and chemical investigation of papuan marine organisms for the discovery of potential cytotoxic marine natural products

2025· article· en· W4414307828 on OpenAlex
Novriyandi Hanif, Jonathan Stefanson Pakan, Shannon Christela Lisias, Wildan Bachtiar Sael, Nurul Fajar Santosa, Trianda Ayuning Tyas, Martinus Mario Lemuel, Kusdiantoro Mohamad, Siti Sa’diah, Fitriya N. Dewi, Emmanuel T. Oluwabusola, Yuta Tsunematsu, Lik Tong Tan, Ekowati Chasanah, Anggia Murni, Nicole J. de Voogd, Takahiro Jomori, Masaki Kita, Marcel Jaspars, Junichi Tanaka

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueNatural Product Research · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMarine Sponges and Natural Products
Canadian institutionsDiscovery Centre
FundersBadan Riset dan Inovasi Nasional
KeywordsCheminformaticsCytotoxicityCytotoxic T cellBiological activitySpongeChemical structureChemical toxicityChemical biology

Abstract

fetched live from OpenAlex

An integrated approach combining biological and chemical investigations were carried out to uncover novel cytotoxic molecules from diverse Papuan marine organisms. Of 386 marine-derived extracts, about 13% (50 extracts) showed significant toxicity in the Artemia salina lethality assay (LC50 ≤ 5 µg/mL). Analysis of the Z-factor and Z’-factor confirmed the excellent quality of the assay (Z = 0.76, Z’ = 0.5). Of the 50 active extracts, seven extracts from Achantostrongylophora ingens, Theonella sp., Ianthella basta, a cyanobacterium, a sponge from family Thorectidae, and a rare Axinella sp. were further evaluated for cytotoxicity against HEK293T, 1H NMR spectral, LC-HR-MS/MS, feature-based molecular networking (FBMN), and chemoinformatics analyses. The chemical analyses revealed the presence of 43 known and 381 putatively new bioactive molecules. The integrated biological and chemistry approach adopted in this study is effective for prioritising important marine extracts with high probability of discovering novel cytotoxic compounds.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.004
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.037
Threshold uncertainty score0.487

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.004
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.024
GPT teacher head0.311
Teacher spread0.287 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it