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Record W4414307828 · doi:10.1080/14786419.2025.2559778

Integrated biological and chemical investigation of papuan marine organisms for the discovery of potential cytotoxic marine natural products

2025· article· en· W4414307828 on OpenAlexaff
Novriyandi Hanif, Jonathan Stefanson Pakan, Shannon Christela Lisias, Wildan Bachtiar Sael, Nurul Fajar Santosa, Trianda Ayuning Tyas, Martinus Mario Lemuel, Kusdiantoro Mohamad, Siti Sa’diah, Fitriya N. Dewi, Emmanuel T. Oluwabusola, Yuta Tsunematsu, Lik Tong Tan, Ekowati Chasanah, Anggia Murni, Nicole J. de Voogd, Takahiro Jomori, Masaki Kita, Marcel Jaspars, Junichi Tanaka

Bibliographic record

VenueNatural Product Research · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMarine Sponges and Natural Products
Canadian institutionsDiscovery Centre
FundersBadan Riset dan Inovasi Nasional
KeywordsCheminformaticsCytotoxicityCytotoxic T cellBiological activitySpongeChemical structureChemical toxicityChemical biology

Abstract

fetched live from OpenAlex

An integrated approach combining biological and chemical investigations were carried out to uncover novel cytotoxic molecules from diverse Papuan marine organisms. Of 386 marine-derived extracts, about 13% (50 extracts) showed significant toxicity in the Artemia salina lethality assay (LC50 ≤ 5 µg/mL). Analysis of the Z-factor and Z’-factor confirmed the excellent quality of the assay (Z = 0.76, Z’ = 0.5). Of the 50 active extracts, seven extracts from Achantostrongylophora ingens, Theonella sp., Ianthella basta, a cyanobacterium, a sponge from family Thorectidae, and a rare Axinella sp. were further evaluated for cytotoxicity against HEK293T, 1H NMR spectral, LC-HR-MS/MS, feature-based molecular networking (FBMN), and chemoinformatics analyses. The chemical analyses revealed the presence of 43 known and 381 putatively new bioactive molecules. The integrated biological and chemistry approach adopted in this study is effective for prioritising important marine extracts with high probability of discovering novel cytotoxic compounds.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.002

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.024
GPT teacher head0.311
Teacher spread0.287 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

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