MétaCan
Menu
Back to cohort
Record W6995803029

Phenome-wide, Metabolomic and Proteomic Association Scan of SHROOM3 Haplotypes Based on Imputed Exonic Variants

2023· article· en· W6995803029 on OpenAlexfundno aff

Bibliographic record

VenueView · 2023
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPhosphodiesterase function and regulation
Canadian institutionsnot available
FundersNational Cancer InstituteSchool of Medicine, Indiana UniversityUniversity of North Carolina at Chapel HillUniversity of Texas MD Anderson Cancer CenterUniversity of WashingtonCollege of Engineering, Michigan State UniversitySchool of Medicine, University of North Carolina at Chapel HillState Key Laboratory of Oncology in South ChinaShenzhen Research Institute, City University of Hong KongMichigan State UniversityNational Taiwan UniversityNational Taiwan University HospitalChinese University of Hong KongSun Yat-sen UniversityCurtin University of TechnologyPerelman School of Medicine, University of PennsylvaniaVanderbilt University Medical CenterSun Yat-sen University Cancer CenterSchool of Medicine, Case Western Reserve UniversityCommonwealth of KentuckyRush UniversityWayne State UniversityHarvard T.H. Chan School of Public HealthPennsylvania State UniversityLeonard M. Miller School of MedicineUniversity of TorontoCase Western Reserve UniversityInstitute for Translational Medicine and TherapeuticsVanderbilt UniversityUniversity of PennsylvaniaCarolina Population Center, University of North Carolina at Chapel HillUniversity of Miami
KeywordsHaplotypeGenetic variantsGenetic associationGenome-wide association studyGeneKidney diseaseSingle-nucleotide polymorphismAssociation (psychology)MetabolomicsProteomics
DOInot available

Abstract

fetched live from OpenAlex

SHROOM3 encodes an actin-binding protein involved in cell shaping. Genome-wide association studies (GWAS) identified common variants at SHROOM3 associated with chronic kidney disease, creatinine-based estimated glomerular filtration rate (eGFRcrea), and serum magnesium (Mg). To understand underlying physiological mechanisms of SHROOM3, we conducted a phenome-wide, metabolomic, and proteomic analysis of SHROOM3 haplotypes in the Cooperative Health Research in South Tyrol (CHRIS) study.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.721
Threshold uncertainty score0.299

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.226
Teacher spread0.218 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2023
Admission routes1
Has abstractyes

Explore more

Same venueViewSame topicPhosphodiesterase function and regulationFrench-language works237,207