Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
2009· article· en· Applied and Environmental Microbiology· Environmental Science
aff
21,757
citations
Works
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CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
2015· article· en· Genome Research· Biochemistry, Genetics and Molecular Biology
fundno aff
12,819
citations
Structure, function and diversity of the healthy human microbiome
2012· article· en· Nature· Biochemistry, Genetics and Molecular Biology
afffund
11,935
citations
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
2013· article· en· Nature Biotechnology· Biochemistry, Genetics and Molecular Biology
afffundno abstract
9,357
citations
PICRUSt2 for prediction of metagenome functions
2020· letter· en· Nature Biotechnology· Biochemistry, Genetics and Molecular Biology
affno abstract
6,537
citations
Environmental Genome Shotgun Sequencing of the Sargasso Sea
2004· article· en· Science· Environmental Science
aff
4,369
citations
PHASTER: a better, faster version of the PHAST phage search tool
2016· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
afffund
3,760
citations
Microbiome Datasets Are Compositional: And This Is Not Optional
2017· review· en· Frontiers in Microbiology· Dentistry
aff
3,067
citations
Environment dominates over host genetics in shaping human gut microbiota
2018· article· en· Nature· Biochemistry, Genetics and Molecular Biology
fundno affno abstract
2,975
citations
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
2017· article· en· Nature Biotechnology· Biochemistry, Genetics and Molecular Biology
aff
2,712
citations
Antibiotic resistance is ancient
2011· article· en· Nature· Biochemistry, Genetics and Molecular Biology
afffundno abstract
2,697
citations
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
2010· article· en· Bioinformatics· Biochemistry, Genetics and Molecular Biology
afffund
2,574
citations
Insights into the phylogeny and coding potential of microbial dark matter
2013· article· en· Nature· Biochemistry, Genetics and Molecular Biology
afffund
2,445
citations
Shotgun metagenomics, from sampling to analysis
2017· review· en· Nature Biotechnology· Environmental Science
afffundno abstract
2,155
citations
The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific
2007· article· en· PLoS Biology· Environmental Science
aff
2,103
citations
MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data
2017· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
aff
1,965
citations
Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity
2016· article· en· Science· Biochemistry, Genetics and Molecular Biology
aff
1,951
citations
Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data
2020· article· en· Nature Protocols· Biochemistry, Genetics and Molecular Biology
afffundno abstract
1,822
citations
A Metagenomic Survey of Microbes in Honey Bee Colony Collapse Disorder
2007· article· en· Science· Agricultural and Biological Sciences
aff
1,778
citations
Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range
2015· article· en· Scientific Reports· Agricultural and Biological Sciences
afffund
1,734
citations
Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis
2014· article· en· Microbiome· Computer Science
afffund
1,413
citations
CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning
2023· article· en· Nature Methods· Biochemistry, Genetics and Molecular Biology
afffundno abstract
1,386
citations
A new genomic blueprint of the human gut microbiota
2019· article· en· Nature· Biochemistry, Genetics and Molecular Biology
aff
1,385
citations
Symptomatic atherosclerosis is associated with an altered gut metagenome
2012· article· en· Nature Communications· Biochemistry, Genetics and Molecular Biology
fundno aff
1,366
citations
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
2019· article· en· Nature Communications· Biochemistry, Genetics and Molecular Biology
aff
1,154
citations