Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM
2013· preprint· en· DROPS (Schloss Dagstuhl – Leibniz Center for Informatics)· Biochemistry, Genetics and Molecular Biology
fundno aff
5 348
citations
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ABySS: A parallel assembler for short read sequence data
2009· article· en· Genome Research· Biochemistry, Genetics and Molecular Biology
afffund
3 765
citations
Proksee: in-depth characterization and visualization of bacterial genomes
2023· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
afffund
1 720
citations
A complete bacterial genome assembled de novo using only nanopore sequencing data
2015· article· en· Nature Methods· Biochemistry, Genetics and Molecular Biology
affsans résumé
1 513
citations
Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies
2018· article· en· BMC Bioinformatics· Biochemistry, Genetics and Molecular Biology
fundno aff
1 285
citations
The sequence and de novo assembly of the giant panda genome
2009· article· en· Nature· Biochemistry, Genetics and Molecular Biology
aff
1 222
citations
De novo assembly and analysis of RNA-seq data
2010· article· en· Nature Methods· Biochemistry, Genetics and Molecular Biology
affsans résumé
1 050
citations
MOB-suite: software tools for clustering, reconstruction and typing of plasmids from draft assemblies
2018· article· en· Microbial Genomics· Biochemistry, Genetics and Molecular Biology
afffund
978
citations
The Release 6 reference sequence of the Drosophila melanogaster genome
2015· article· en· Genome Research· Biochemistry, Genetics and Molecular Biology
aff
576
citations
Ray: Simultaneous Assembly of Reads from a Mix of High-Throughput Sequencing Technologies
2010· article· en· Journal of Computational Biology· Biochemistry, Genetics and Molecular Biology
afffund
559
citations
The genome of flax (Linum usitatissimum) assembled de novo from short shotgun sequence reads
2012· article· en· The Plant Journal· Agricultural and Biological Sciences
aff
440
citations
De novo transcriptome assembly with ABySS
2009· article· en· Bioinformatics· Biochemistry, Genetics and Molecular Biology
afffund
410
citations
A Physical Map of the 1-Gigabase Bread Wheat Chromosome 3B
2008· article· en· Science· Agricultural and Biological Sciences
aff
406
citations
A physical map of the mouse genome
2002· article· en· Nature· Biochemistry, Genetics and Molecular Biology
affsans résumé
334
citations
A complete telomere-to-telomere assembly of the maize genome
2023· article· en· Nature Genetics· Agricultural and Biological Sciences
fundno aff
315
citations
Assessment of Metagenomic Assembly Using Simulated Next Generation Sequencing Data
2012· article· en· PLoS ONE· Biochemistry, Genetics and Molecular Biology
fundno aff
302
citations
Evaluation of Oxford Nanopore’s MinION Sequencing Device for Microbial Whole Genome Sequencing Applications
2018· article· en· Scientific Reports· Biochemistry, Genetics and Molecular Biology
afffundabout
295
citations
De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesis
2010· article· en· BMC Genomics· Biochemistry, Genetics and Molecular Biology
aff
295
citations
Whole Genome Amplification and De novo Assembly of Single Bacterial Cells
2009· article· en· PLoS ONE· Biochemistry, Genetics and Molecular Biology
fundno aff
265
citations
Species-Level Deconvolution of Metagenome Assemblies with Hi-C–Based Contact Probability Maps
2014· article· en· G3 Genes Genomes Genetics· Biochemistry, Genetics and Molecular Biology
fundno aff
229
citations
A physical map of the chicken genome
2004· article· en· Nature· Biochemistry, Genetics and Molecular Biology
affsans résumé
229
citations
Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads
2020· article· en· Nature Biotechnology· Biochemistry, Genetics and Molecular Biology
aff
225
citations
DNA template strand sequencing of single-cells maps genomic rearrangements at high resolution
2012· article· en· Nature Methods· Biochemistry, Genetics and Molecular Biology
afffundsans résumé
221
citations
Quantifying sequence proportions in a <scp>DNA</scp>‐based diet study using Ion Torrent amplicon sequencing: which counts count?
2013· article· en· Molecular Ecology Resources· Environmental Science
afffund
221
citations
Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding
2016· article· en· PLoS Genetics· Biochemistry, Genetics and Molecular Biology
aff
219
citations