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Record W4401420229 · doi:10.1016/j.cell.2024.05.059

Guidelines for minimal information on cellular senescence experimentation in vivo

2024· review· en· W4401420229 on OpenAlexafffund
Mikołaj Ogrodnik, Juan Carlos Acosta, Peter D. Adams, Fabrizio d’Adda di Fagagna, Darren J. Baker, Cleo L. Bishop, Tamir Chandra, Manuel Collado, Jesús Gil, Vassilis G. Gorgoulis, Флориан Грубер, Eiji Hara, Pidder Jansen‐Dürr, Diana Jurk, Sundeep Khosla, James L. Kirkland, Valery Krizhanovsky, Tohru Minamino, Laura J. Niedernhofer, João F. Passos, Nadja Ring, Heinz Redl, Paul D. Robbins, Françis Rodier, Karin Scharffetter‐­Kochanek, John M. Sedivy, Ewa Sikora, Kenneth W. Witwer, Thomas von Zglinicki, Maximina H. Yun, Johannes Grillari, Marco Demaria

Bibliographic record

VenueCell · 2024
Typereview
Languageen
FieldMedicine
TopicTelomeres, Telomerase, and Senescence
Canadian institutionsUniversité de MontréalCentre Hospitalier de l’Université de Montréal
FundersNational Institute on AgingAgencia Estatal de InvestigaciónFonds de Recherche du Québec - SantéNational Institutes of HealthEuropean CommissionUniversität für Bodenkultur WienBuck Institute for Research on AgingHerzfelder'sche FamilienstiftungGeneral Secretariat for Research and TechnologyNederlandse Organisatie voor Wetenschappelijk OnderzoekMedical Research CouncilRegione LombardiaHorizon 2020 Framework ProgrammeFondation pour la Recherche MédicaleGlenn Foundation for Medical ResearchAustrian Science FundFondazione Regionale per la Ricerca BiomedicaZonMwAssociazione Italiana per la Ricerca sul CancroCancer Research SocietyImperial College LondonBiotechnology and Biological Sciences Research CouncilCancer Research UKNatural Sciences and Engineering Research Council of CanadaPfizerNoaber FoundationNational Cancer InstituteLudwig Boltzmann GesellschaftOvarian Cancer CanadaEuropean Regional Development FundMerck KGaAZentrum für Regenerative Therapien DresdenAllgemeine UnfallversicherungsanstaltBrown UniversityDeutsche Forschungsgemeinschaft
KeywordsBiologySenescenceIn vivoCell biologyCellular senescenceComputational biologyGeneticsPhenotypeGene

Abstract

fetched live from OpenAlex

Cellular senescence is a cell fate triggered in response to stress and is characterized by stable cell-cycle arrest and a hypersecretory state. It has diverse biological roles, ranging from tissue repair to chronic disease. The development of new tools to study senescence in vivo has paved the way for uncovering its physiological and pathological roles and testing senescent cells as a therapeutic target. However, the lack of specific and broadly applicable markers makes it difficult to identify and characterize senescent cells in tissues and living organisms. To address this, we provide practical guidelines called "minimum information for cellular senescence experimentation in vivo" (MICSE). It presents an overview of senescence markers in rodent tissues, transgenic models, non-mammalian systems, human tissues, and tumors and their use in the identification and specification of senescent cells. These guidelines provide a uniform, state-of-the-art, and accessible toolset to improve our understanding of cellular senescence in vivo.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.009
metaresearch head score (Gemma)0.011
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: Reporting · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.991
Threshold uncertainty score0.089

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0090.011
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0030.002
Bibliometrics0.0040.003
Science and technology studies0.0010.002
Scholarly communication0.0020.003
Open science0.0050.003
Research integrity0.0060.005
Insufficient payload (model declined to judge)0.0270.021

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.123
GPT teacher head0.409
Teacher spread0.285 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designNot applicable
DomainReporting
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations291
Published2024
Admission routes2
Has abstractyes

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