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Citation Contamination by Paper Mill Articles in Systematic Reviews of the Life Sciences

2025· article· en· W4411237045 on OpenAlexaff
Gengyan Tang, Hao Cai

Bibliographic record

VenueJAMA Network Open · 2025
Typearticle
Languageen
FieldSocial Sciences
TopicAcademic integrity and plagiarism
Canadian institutionsUniversity of Calgary
Fundersnot available
KeywordsCitationMillContaminationEnvironmental scienceHistoryLibrary scienceBiologyComputer scienceArchaeologyEcology

Abstract

fetched live from OpenAlex

Importance: Systematic reviews are the criterion standard for evidence synthesis in the life sciences, yet their reliability and integrity are threatened by citation contamination from fabricated publications produced by paper mills. Despite growing awareness, the extent and implications of this issue remain unclear. Objectives: To analyze the prevalence, characteristics, affected subject areas, and citation patterns of retracted paper mill articles cited in systematic reviews. Design, Setting, and Participants: This cross-sectional study analyzed systematic reviews published between 2013 and 2024, indexed in Web of Science (WoS). References were matched against the Retraction Watch dataset, and full texts were reviewed to identify retracted paper mill articles incorporated into the evidence synthesis. Main Outcomes and Measures: The study assessed (1) contamination prevalence, defined as the proportion of systematic reviews incorporating retracted paper mill articles into the evidence synthesis; (2) geographic distribution of citing authors according to institutional affiliations; (3) citation timing and trends, including the time lag between incorporation and article retraction; (4) affected research areas, categorized by WoS subject classifications; and (5) citation patterns, including highly contaminated reviews (≥3 incorporations of retracted articles). Results: Of the total of 200 000 systematic reviews, 299 incorporated at least 1 retracted paper mill article into the evidence synthesis (contamination rate, 0.15%). Among them, 256 (85.6%) included a single retracted article, and 43 (14.4%) included multiple such articles. Of 1802 author affiliations associated with the contaminated reviews, 660 (36.6%) were from institutions in China. Of 385 total citations, 124 (32.2%) occurred after retraction, including 13 occurring more than 500 days after the retraction date. Oncology was the most affected field (48 of 299 [16.1%]). Five reviews each included 5 or more retracted articles, all published in journals under questionable publishers. Conclusions and Relevance: In this cross-sectional study of life sciences systematic reviews, contamination remained low but increased over time, posing a risk to research integrity. Continued citation of retracted articles, even after retraction, highlights the need for rigorous screening practices. Correcting contaminated reviews and developing automated detection tools are essential to preserving the credibility of systematic reviews.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Direct model labels (unvalidated)

Per-model category and study-design labels from the labeling rounds. They are machine output, unvalidated, and the disagreement between models ships as data. No study design here is MEDLINE-validated yet.

Model armCategoriesStudy designConfidence
gemmaMetaresearchResearch integrityBibliometrics
Domain: Methods · Genre: Empirical
About the Canadian research system: no · About a Canadian topic: no
Observationallow
gptMetaresearchBibliometricsResearch integrity
Domain: Methods · Genre: Empirical
About the Canadian research system: no · About a Canadian topic: no
Observationalmedium
models agreeAgreement compares identical category sets and study designs across arms.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.014
metaresearch head score (Gemma)0.006
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.645
Threshold uncertainty score0.684

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0140.006
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.047
GPT teacher head0.343
Teacher spread0.296 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Labeled directly by 2 models reading the full record.

Study designObservational
DomainMethods
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations13
Published2025
Admission routes1
Has abstractyes

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