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4,299,418 works, Canadian by any of four routes.

Every filter state is a URL; the URL is the query; the query is citable via /q/⟨hash⟩. The page, the API and the export parse the same parameters.

The current cohort, streamed from the database: every work column, the machine labels, the provisional scores, and the per-row validation status. Exports are capped at 100,000 rows. Mints a permanent /q/ link for this exact query. The same filters always produce the same link, whoever asks.

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Bioinformatics and Genomic Networks
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Direct Codex and Gemma labels are unvalidated and sparse. Distilled predictions cover the full frame and are also unvalidated. Choose the evidence source explicitly; absence of a direct label is never a negative label.

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The four routes compose: require the funder route and exclude affiliation to get the funder-only stratum no affiliation-based frame ever sees.

1,922 results · 1 filter active ·
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20002025
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Machine labels · sparse coverage
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An unlabeled work is unknown, not a negative. Label coverage is reported on every query.
1,922 works in the cohort · of 4,299,418page 1 of 39

Labels cover 6 of 1,922 works in this cohort. The rest are unlabeled, which is not a negative label: the label table is sparse today and grows as labeling rounds land.

Distilled predictions cover 1,922 of 1,922 works in this cohort. Predictions are machine_predicted_unvalidated. The Gemma side is a direct model label for every work (title-only); the Codex side is a distilled, calibrated classifier. Candidate is the union; consensus is the intersection.

affunlabeled
The Reactome pathway Knowledgebase
Antonio Fabregat, Konstantinos Sidiropoulos, Phani Garapati, Marc Gillespie, Kerstin Hausmann, Robin Haw +16 more
2015· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
6,014
citations
affunlabeled
The Reactome Pathway Knowledgebase
Antonio Fabregat, Lisa Matthews, Konstantinos Sidiropoulos, Marc Gillespie, Phani Garapati, Robin Haw +16 more
2017· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
3,172
citations
afffundunlabeled
The reactome pathway knowledgebase 2022
Marc Gillespie, Bijay Jassal, Ralf Stephan, M Orlic-Milacic, Karen Rothfels, Andrea Senff‐Ribeiro +29 more
2021· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
2,542
citations
affunlabeled
The reactome pathway knowledgebase
Bijay Jassal, Lisa Matthews, Guilherme Viteri, Chuqiao Gong, Pascual Lorente, Antonio Fabregat +17 more
2019· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
2,363
citations
afffundunlabeled
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier +47 more
2010· article· en· Science· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
2,247
citations
affunlabeled
Global Mapping of the Yeast Genetic Interaction Network
Amy H.Y. Tong, Guillaume Lesage, Gary D. Bader, Huiming Ding, Hong Xu, Xiaofeng Xin +44 more
2004· article· en· Science· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
2,130
citations
affunlabeled
The Reactome pathway knowledgebase
David Croft, Robin Haw, M Orlic-Milacic, Joel Weiser, Guanming Wu, Michael Caudy +15 more
2013· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
1,957
citations
affno abstractunlabeled
A travel guide to Cytoscape plugins
Rintaro Saito, Michael Smoot, Keiichiro Ono, Johannes Ruscheinski, Pengliang Wang, Samad Lotia +3 more
2012· article· en· Nature Methods· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
1,560
citations
afffundno abstractunlabeled
A Proteome-Scale Map of the Human Interactome Network
Thomas Rolland, Murat Taşan, Benoît Charloteaux, Samuel Pevzner, Quan Zhong, Nidhi Sahni +64 more
2014· article· en· Cell· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
1,458
citations
affunlabeled
GeneMANIA update 2018
Max Franz, Harold Rodriguez, Christian Lopes, Khalid Zuberi, Jason Montojo, Gary D. Bader +1 more
2018· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
1,435
citations
afffundno abstractunlabeled
A reference map of the human binary protein interactome
Katja Luck, Dae‐Kyum Kim, L. Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian +82 more
2020· article· en· Nature· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
1,321
citations
affunlabeled
Pathway Commons, a web resource for biological pathway data
Ethan Cerami, Emek Demir, Igor Rodchenkov, Özgün Babur, Nadia Anwar, Nikolaus Schultz +2 more
2010· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
1,156
citations
affunlabeled
Biological Network Exploration with Cytoscape 3
Gang Su, John H. Morris, Barry Demchak, Gary D. Bader
2014· article· en· Current Protocols in Bioinformatics· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
1,086
citations
afffundunlabeled
The BioGRID interaction database: 2013 update
Andrew Chatr‐aryamontri, Bobby‐Joe Breitkreutz, Sven Heinicke, Lorrie Boucher, Andrew Winter, Chris Stark +14 more
2012· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
1,031
citations
afffundunlabeled
The BioGRID interaction database: 2017 update
Andrew Chatr‐aryamontri, Rose Oughtred, Lorrie Boucher, Jennifer Rust, Christie Chang, Nadine K. Kolas +8 more
2016· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
1,022
citations
affno abstractunlabeled
The Systems Biology Graphical Notation
Nicolas Le Novère, Michael Hucka, Huaiyu Mi, Stuart Moodie, Falk Schreiber, Anatoly Sorokin +32 more
2009· article· en· Nature Biotechnology· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
947
citations
affunlabeled
Reactome pathway analysis: a high-performance in-memory approach
Antonio Fabregat, Konstantinos Sidiropoulos, Guilherme Viteri, Oscar Forner, Pablo Marín-García, Vicente Arnau +3 more
2017· article· en· BMC Bioinformatics· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
927
citations
affunlabeled
The BioGRID interaction database: 2015 update
Andrew Chatr‐aryamontri, Bobby‐Joe Breitkreutz, Rose Oughtred, Lorrie Boucher, Sven Heinicke, Daici Chen +16 more
2014· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · scholarly_communicationconsensus · none
925
citations
affunlabeled
The History of the Cluster Heat Map
Leland Wilkinson, Michael Friendly
2009· article· en· The American Statistician· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
925
citations
affno abstractunlabeled
An empirical framework for binary interactome mapping
K. Venkatesan, Jean‐François Rual, Alexei Vázquez, Ulrich Stelzl, Irma Lemmens, Tomoko Hirozane-Kishikawa +34 more
2008· article· en· Nature Methods· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
908
citations
afffundno abstractunlabeled
A Census of Human Soluble Protein Complexes
Pierre C. Havugimana, Traver Hart, Tamás Nepusz, Haixuan Yang, Andrei L. Turinsky, Zhihua Li +18 more
2012· article· en· Cell· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
904
citations
affunlabeled
Reactome knowledgebase of human biological pathways and processes
Lisa Matthews, Gopal Gopinath, Marc Gillespie, Michael Caudy, David Croft, Bernard de Bono +14 more
2008· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
886
citations
afffundunlabeled
The BioGRID Interaction Database: 2011 update
C. Stark, Bobby‐Joe Breitkreutz, Andrew Chatr‐aryamontri, Lorrie Boucher, Rose Oughtred, Michael Livstone +9 more
2010· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
867
citations

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