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4,299,418 works, Canadian by any of four routes.

Every filter state is a URL; the URL is the query; the query is citable via /q/⟨hash⟩. The page, the API and the export parse the same parameters.

The current cohort, streamed from the database: every work column, the machine labels, the provisional scores, and the per-row validation status. Exports are capped at 100,000 rows. Mints a permanent /q/ link for this exact query. The same filters always produce the same link, whoever asks.

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Direct Codex and Gemma labels are unvalidated and sparse. Distilled predictions cover the full frame and are also unvalidated. Choose the evidence source explicitly; absence of a direct label is never a negative label.

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The four routes compose: require the funder route and exclude affiliation to get the funder-only stratum no affiliation-based frame ever sees.

1,681 results · 1 filter active ·
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20002025
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Machine labels · sparse coverage
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An unlabeled work is unknown, not a negative. Label coverage is reported on every query.
1,681 works in the cohort · of 4,299,418page 1 of 34

Labels cover 2 of 1,681 works in this cohort. The rest are unlabeled, which is not a negative label: the label table is sparse today and grows as labeling rounds land.

Distilled predictions cover 1,681 of 1,681 works in this cohort. Predictions are machine_predicted_unvalidated. The Gemma side is a direct model label for every work (title-only); the Codex side is a distilled, calibrated classifier. Candidate is the union; consensus is the intersection.

affunlabeled
The Reactome pathway Knowledgebase
Antonio Fabregat, Konstantinos Sidiropoulos, Phani Garapati, Marc Gillespie, Kerstin Hausmann, Robin Haw +16 more
2015· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
6,014
citations
afffundunlabeled
PHASTER: a better, faster version of the PHAST phage search tool
David Arndt, Jason R. Grant, Ana Marcu, Tanvir Sajed, Allison Pon, Yongjie Liang +1 more
2016· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
3,760
citations
afffundunlabeled
HMDB 4.0: the human metabolome database for 2018
David S. Wishart, Yannick Djoumbou-Feunang, Ana Marcu, An Chi Guo, Kevin Y. H. Liang, Rosa Vázquez‐Fresno +22 more
2017· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
3,554
citations
afffundunlabeled
HMDB: the Human Metabolome Database
David S. Wishart, Dorit Tzur, Craig Knox, Roman Eisner, An Chi Guo, N. Young +33 more
2007· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
3,265
citations
affunlabeled
The Reactome Pathway Knowledgebase
Antonio Fabregat, Lisa Matthews, Konstantinos Sidiropoulos, Marc Gillespie, Phani Garapati, Robin Haw +16 more
2017· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
3,172
citations
afffundunlabeled
HMDB 3.0—The Human Metabolome Database in 2013
David S. Wishart, Timothy Jewison, An Chi Guo, Michael Wilson, Craig Knox, Yifeng Liu +17 more
2012· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
2,904
citations
afffundunlabeled
MetaboAnalyst 3.0—making metabolomics more meaningful
Jianguo Xia, Igor Sinelnikov, David S. Wishart
2015· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
2,747
citations
afffundunlabeled
The reactome pathway knowledgebase 2022
Marc Gillespie, Bijay Jassal, Ralf Stephan, M Orlic-Milacic, Karen Rothfels, Andrea Senff‐Ribeiro +29 more
2021· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
2,542
citations
afffundunlabeled
HMDB 5.0: the Human Metabolome Database for 2022
David S. Wishart, AnChi Guo, Eponine Oler, Fei Wang, Afia Anjum, Harrison Peters +31 more
2021· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
2,449
citations
afffundunlabeled
Heatmapper: web-enabled heat mapping for all
Sasha Babicki, David Arndt, Ana Marcu, Yongjie Liang, Jason R. Grant, Adam Maciejewski +1 more
2016· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
2,437
citations
affunlabeled
The reactome pathway knowledgebase
Bijay Jassal, Lisa Matthews, Guilherme Viteri, Chuqiao Gong, Pascual Lorente, Antonio Fabregat +17 more
2019· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
2,363
citations
afffundunlabeled
PHAST: A Fast Phage Search Tool
You Zhou, Yong Liang, Karlene H. Lynch, Jonathan J. Dennis, David S. Wishart
2011· article· en· Nucleic Acids Research· Environmental Science
machine prediction:candidate · noneconsensus · none
2,099
citations
afffundunlabeled
DrugBank 4.0: shedding new light on drug metabolism
Vivian Law, Craig Knox, Yannick Djoumbou-Feunang, Tim Jewison, An Chi Guo, Yifeng Liu +11 more
2013· article· en· Nucleic Acids Research· Computer Science
machine prediction:candidate · noneconsensus · none
2,064
citations
affunlabeled
The Reactome pathway knowledgebase
David Croft, Robin Haw, M Orlic-Milacic, Joel Weiser, Guanming Wu, Michael Caudy +15 more
2013· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
1,957
citations
afffundunlabeled
HMDB: a knowledgebase for the human metabolome
David S. Wishart, Craig Knox, An Chi Guo, Roman Eisner, N. Young, Budhayash Gautam +32 more
2008· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
1,894
citations
fundno affunlabeled
The NHGRI-EBI GWAS Catalog: knowledgebase and deposition resource
Elliot Sollis, Abayomi Mosaku, Ala Abid, Annalisa Buniello, María Cerezo, Laurent Gil +24 more
2022· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
1,733
citations
afffundunlabeled
DrugBank 6.0: the DrugBank Knowledgebase for 2024
Craig Knox, Christen M. Klinger, Mark Franklin, Eponine Oler, Alexander E. Wilson, Allison Pon +35 more
2023· article· en· Nucleic Acids Research· Computer Science
machine prediction:candidate · noneconsensus · none
1,530
citations
affunlabeled
GeneMANIA update 2018
Max Franz, Harold Rodriguez, Christian Lopes, Khalid Zuberi, Jason Montojo, Gary D. Bader +1 more
2018· article· en· Nucleic Acids Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
1,435
citations

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